Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 1.1e-273 946.0 463 100.0
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 3.7e-85 319.7 270 63.0
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.4e-84 317.8 270 62.6
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.8e-84 317.4 269 62.5
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 7.0e-84 315.5 269 61.0
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 1.2e-83 314.7 270 62.6
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 2.6e-83 313.5 269 61.7
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 2.6e-83 313.5 269 61.7
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 2.6e-83 313.5 269 61.7
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 1.7e-82 310.8 269 61.3
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 6.5e-82 308.9 269 60.6
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 5.5e-81 305.8 270 59.6
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 4.7e-80 302.8 270 60.0
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 2.8e-77 293.5 271 58.7
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.4e-76 291.2 301 52.8
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 1.4e-76 291.2 270 57.8
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 3.1e-76 290.0 270 57.4
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 3.1e-76 290.0 270 57.4
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 9.1e-76 288.5 270 57.0
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 1.2e-75 288.1 270 57.0
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 4.5e-75 286.2 270 58.1
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 7.7e-75 285.4 270 56.3
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 1.9e-73 280.8 283 54.8
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 6.1e-72 275.8 177 74.6
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 1.4e-71 274.6 270 55.2
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 3.0e-71 273.5 273 54.2
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 1.5e-70 271.2 282 52.1
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 1.5e-70 271.2 270 52.6
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 1.1e-68 265.0 270 51.1
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 2.0e-67 260.8 278 51.8
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 4.5e-67 259.6 270 49.6
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 5.9e-67 259.2 270 48.9
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 2.9e-66 256.9 270 48.9
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 3.8e-66 256.5 270 50.4
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 3.8e-66 256.5 270 49.3
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 8.5e-66 255.4 270 49.3
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.1e-65 255.0 270 49.3
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 1.5e-65 254.6 270 48.5
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 1.9e-65 254.2 185 63.2
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 1.9e-65 254.2 270 47.8
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 4.2e-65 253.1 270 48.9
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 5.5e-65 252.7 270 48.5
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 7.2e-65 252.3 270 48.9
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 7.2e-65 252.3 270 48.5
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 7.2e-65 252.3 270 48.5
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 2.1e-64 250.8 270 48.9
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 3.6e-64 250.0 270 47.0
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 4.7e-64 249.6 270 48.1
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 4.7e-64 249.6 276 47.5
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 4.7e-64 249.6 278 47.8
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 6.1e-64 249.2 185 62.7
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 6.1e-64 249.2 184 63.0
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 8.0e-64 248.8 270 48.9
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.0e-63 248.4 276 47.1
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.8e-63 247.7 270 47.4
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 2.3e-63 247.3 270 48.1
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 2.3e-63 247.3 270 47.4
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 4.0e-63 246.5 270 47.8
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 4.0e-63 246.5 276 47.1
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 5.2e-63 246.1 270 47.4
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 6.8e-63 245.7 192 63.5
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 8.8e-63 245.4 279 46.6
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 8.8e-63 245.4 270 47.8
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 8.8e-63 245.4 184 62.5
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 8.8e-63 245.4 184 62.5
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 1.2e-62 245.0 205 60.0
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 1.2e-62 245.0 205 59.0
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 1.2e-62 245.0 270 46.3
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 1.5e-62 244.6 293 46.1
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 2.6e-62 243.8 276 46.7
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 2.6e-62 243.8 177 63.8
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 3.4e-62 243.4 270 47.8
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.4e-62 243.4 270 47.4
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 5.7e-62 242.7 186 62.4
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 9.8e-62 241.9 270 47.4
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.3e-61 241.5 269 47.2
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 2.2e-61 240.7 270 47.0
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 2.2e-61 240.7 273 46.5
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 2.2e-61 240.7 185 61.1
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 2.2e-61 240.7 187 62.0
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 2.8e-61 240.4 186 61.8
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 2.8e-61 240.4 185 62.2
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 3.7e-61 240.0 273 46.5
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 6.3e-61 239.2 295 44.4
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 6.3e-61 239.2 271 47.6
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 8.3e-61 238.8 270 48.5
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.1e-60 238.4 271 47.2
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.1e-60 238.4 194 60.3
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 1.1e-60 238.4 167 67.1
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 2.4e-60 237.3 270 47.0
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 2.4e-60 237.3 270 47.0
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 2.4e-60 237.3 183 61.7
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 3.1e-60 236.9 183 60.7
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 5.4e-60 236.1 195 57.9
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 1.2e-59 235.0 270 46.3
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 4.5e-59 233.0 268 46.3
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 5.9e-59 232.6 185 60.5
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.0e-58 231.9 177 63.3
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 1.7e-58 231.1 270 44.1
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 1.7e-58 231.1 167 62.3
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 2.3e-58 230.7 178 62.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.9e-58 230.3 193 57.0
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 6.6e-58 229.2 176 62.5
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 8.6e-58 228.8 188 58.0
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 1.5e-57 228.0 300 41.3
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 1.5e-57 228.0 268 45.5
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 1.5e-57 228.0 270 45.2
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-57 228.0 175 58.9
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 4.3e-57 226.5 271 46.1
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.2e-56 224.9 270 45.2
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 2.8e-56 223.8 270 43.7
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 4.7e-56 223.0 319 40.8
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 4.7e-56 223.0 368 36.4
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 8.0e-56 222.2 176 59.7
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 8.0e-56 222.2 165 60.6
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 2.3e-55 220.7 147 70.1
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 2.3e-55 220.7 183 59.0
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 3.0e-55 220.3 184 56.0
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 1.2e-54 218.4 268 45.1
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 2.6e-54 217.2 183 56.8
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 3.4e-54 216.9 192 54.2
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 4.4e-54 216.5 186 56.5
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 2.9e-53 213.8 184 55.4
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 1.1e-52 211.8 176 56.8
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 1.4e-52 211.5 176 56.2
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 1.8e-52 211.1 188 52.7
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 2.4e-52 210.7 177 57.6
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 9.2e-52 208.8 248 44.4
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 9.2e-52 208.8 271 43.5
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 2.7e-51 207.2 187 51.9
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 7.8e-51 205.7 167 58.7
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 3.9e-50 203.4 189 55.6
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.9e-49 201.1 270 43.0
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.5e-49 200.7 270 43.0
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 4.3e-49 199.9 178 52.8
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 5.6e-49 199.5 185 52.4
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 5.6e-49 199.5 196 50.0
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 7.3e-49 199.1 295 41.0
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.4e-47 194.9 273 41.4
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 5.2e-47 193.0 176 52.8
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 1.6e-43 181.4 175 49.7
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 6.0e-43 179.5 171 53.8
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 7.8e-43 179.1 169 51.5
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 2.5e-41 174.1 119 72.3
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 6.2e-40 169.5 124 65.3
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 3.1e-39 167.2 178 48.9
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 3.1e-39 167.2 174 46.0
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 4.0e-39 166.8 198 44.9
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 4.0e-39 166.8 182 45.6
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.2e-38 165.2 182 45.6
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 8.3e-37 159.1 188 44.1
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.9e-36 157.9 122 59.8
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 7.1e-36 156.0 127 60.6
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 9.2e-36 155.6 207 41.1
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 3.9e-34 150.2 119 57.1
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 5.1e-34 149.8 172 43.6
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 5.1e-34 149.8 193 40.9
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.1e-33 148.7 177 42.9
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 2.1e-32 144.4 146 54.1
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 5.8e-30 136.3 114 53.5
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 7.6e-30 136.0 124 49.2
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 9.2e-28 129.0 177 36.7
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 3.6e-24 117.1 94 67.0
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.6e-24 117.1 175 42.3
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 3.6e-24 117.1 94 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 4.9e-21 106.7 141 39.7
MCO11G084 Micromonas commoda HOM05D003989 ORTHO05D004626 6.4e-21 106.3 194 34.0
Cre16.g694703 Chlamydomonas reinhardtii HOM05D003989 ORTHO05D004626 4.2e-20 103.6 163 36.2
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 4.6e-19 100.1 92 57.6
C04p60570 Brassica napus HOM05D003989 ORTHO05D004626 1.5e-17 95.1 66 72.7
Medtr1g069860 Medicago truncatula HOM05D003989 ORTHO05D004626 4.5e-14 83.6 67 56.7
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 4.9e-13 80.1 183 29.5
BcaC02g11217 Brassica carinata HOM05D003989 ORTHO05D004626 9.3e-12 75.9 46 71.7
BcaC02g11218 Brassica carinata HOM05D003989 ORTHO05D004626 9.3e-12 75.9 46 71.7
BolC4t23443H Brassica oleracea HOM05D003989 ORTHO05D004626 9.3e-12 75.9 46 71.7
C04p19080 Brassica napus HOM05D003989 ORTHO05D004626 4.6e-11 73.6 46 69.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 5.6e-09 66.6 43 69.8
BolC4t27553H Brassica oleracea HOM05D003989 ORTHO05D004626 4.8e-08 63.5 39 79.5
Lalb_Chr01g0007351 Lupinus albus HOM05D001774 ORTHO05D001663 5.3e-07 60.1 124 33.9
A04p23960 Brassica napus HOM05D047153 ORTHO05D041738 2.6e-06 57.8 35 71.4
BraA04t17920Z Brassica rapa HOM05D047153 ORTHO05D041738 2.6e-06 57.8 35 71.4
Pp3c9_26010 Physcomitrium patens HOM05D001774 ORTHO05D001663 5.8e-06 56.6 172 27.9


User provided reference genes

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