Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 7.5e-32 140.6 73 100.0
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 3.5e-29 131.7 73 91.8
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 3.5e-29 131.7 73 91.8
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 3.5e-29 131.7 72 94.4
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 4.5e-29 131.3 72 94.4
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 4.5e-29 131.3 73 93.2
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 4.5e-29 131.3 73 93.2
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.3e-28 129.8 73 91.8
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.8e-28 128.3 73 91.8
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 2.5e-27 125.6 72 93.1
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 6.1e-26 120.9 73 90.4
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 8.9e-25 117.1 73 84.9
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.0e-20 103.6 73 75.3
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 3.3e-19 98.6 72 72.2
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 5.6e-19 97.8 72 70.8
AT2G31305 Arabidopsis thaliana HOM05D006246 ORTHO05D007932 2.1e-18 95.9 56 92.9
BcaB06g28444 Brassica carinata HOM05D006246 ORTHO05D007932 2.8e-18 95.5 55 92.7
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 2.8e-18 95.5 68 82.4
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 2.8e-18 95.5 68 82.4
AL4G26530 Arabidopsis lyrata HOM05D006246 ORTHO05D007932 4.7e-18 94.7 55 92.7
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 6.2e-18 94.4 67 73.1
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 8.0e-18 94.0 53 88.7
C04p19050 Brassica napus HOM05D006246 ORTHO05D007932 8.0e-18 94.0 56 89.3
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 8.0e-18 94.0 72 69.4
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 1.4e-17 93.2 72 70.8
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 4.0e-17 91.7 77 67.5
BraA05t20360Z Brassica rapa HOM05D006246 ORTHO05D007932 6.8e-17 90.9 56 91.1
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 1.2e-16 90.1 52 86.5
A04p24110 Brassica napus HOM05D006246 ORTHO05D007932 1.5e-16 89.7 58 89.7
C04p60820 Brassica napus HOM05D006246 ORTHO05D007932 1.5e-16 89.7 58 89.7
BraA04t17931Z Brassica rapa HOM05D006246 ORTHO05D007932 1.5e-16 89.7 58 89.7
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 2.0e-16 89.4 48 85.4
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 2.6e-16 89.0 46 91.3
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 5.8e-16 87.8 47 87.2
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 5.8e-16 87.8 44 90.9
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 5.8e-16 87.8 44 90.9
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 5.8e-16 87.8 44 93.2
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 5.8e-16 87.8 76 65.8
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 5.8e-16 87.8 72 66.7
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 7.5e-16 87.4 46 89.1
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 7.5e-16 87.4 46 89.1
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.7e-15 86.3 56 80.4
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.2e-15 85.9 72 62.5
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 2.9e-15 85.5 74 63.5
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.9e-15 85.5 43 88.4
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 2.9e-15 85.5 46 87.0
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 3.7e-15 85.1 45 88.9
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 3.7e-15 85.1 74 63.5
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 4.9e-15 84.7 57 75.4
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 6.4e-15 84.3 51 78.4
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 8.3e-15 84.0 69 66.7
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 8.3e-15 84.0 71 66.2
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 8.3e-15 84.0 78 60.3
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 1.1e-14 83.6 42 90.5
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 2.4e-14 82.4 41 87.8
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 3.2e-14 82.0 49 83.7
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 4.1e-14 81.6 65 63.1
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 4.1e-14 81.6 42 88.1
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 5.4e-14 81.3 77 63.6
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 5.4e-14 81.3 42 92.9
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 5.4e-14 81.3 47 78.7
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 5.4e-14 81.3 47 78.7
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 5.4e-14 81.3 50 74.0
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 9.2e-14 80.5 74 62.2
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 9.2e-14 80.5 52 71.2
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 9.2e-14 80.5 46 80.4
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 1.6e-13 79.7 73 64.4
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 3.5e-13 78.6 73 61.6
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 3.5e-13 78.6 73 61.6
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 3.5e-13 78.6 40 85.0
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 3.5e-13 78.6 43 83.7
AL2G35340 Arabidopsis lyrata HOM05D006246 ORTHO05D007932 4.6e-13 78.2 60 73.3
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 4.6e-13 78.2 49 75.5
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 4.6e-13 78.2 47 80.9
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 1.0e-12 77.0 78 61.5
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 1.0e-12 77.0 47 74.5
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 1.0e-12 77.0 46 76.1
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.3e-12 76.6 44 79.5
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.7e-12 76.3 47 72.3
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 1.7e-12 76.3 46 73.9
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 2.3e-12 75.9 43 76.7
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 2.3e-12 75.9 35 94.3
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 2.3e-12 75.9 34 97.1
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 3.9e-12 75.1 39 82.1
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.9e-12 75.1 46 73.9
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 5.0e-12 74.7 33 97.0
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 5.0e-12 74.7 74 58.1
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 8.6e-12 73.9 45 73.3
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 2.5e-11 72.4 34 88.2
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 2.5e-11 72.4 47 74.5
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 4.3e-11 71.6 41 82.9
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 5.6e-11 71.2 70 57.1
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.2e-10 70.1 45 73.3
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 1.6e-10 69.7 36 83.3
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.6e-10 69.7 79 53.2
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 2.1e-10 69.3 36 83.3
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 2.8e-10 68.9 35 82.9
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 3.6e-10 68.6 75 53.3
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 1.4e-09 66.6 38 76.3
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 1.8e-09 66.2 35 80.0
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 2.3e-09 65.9 66 56.1
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 5.2e-09 64.7 67 55.2
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 5.2e-09 64.7 34 82.4
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 6.8e-09 64.3 79 49.4
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 1.5e-08 63.2 74 50.0
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.0e-08 62.8 40 72.5
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 3.4e-08 62.0 42 69.0
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 1.7e-07 59.7 71 45.1
Gohir.A05G410800 Gossypium hirsutum HOM05D006246 ORTHO05D007932 6.4e-07 57.8 38 73.7
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 8.3e-07 57.4 54 53.7
Gohir.D04G005100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.9e-06 56.2 37 73.0
Gorai.012G006400 Gossypium raimondii HOM05D006246 ORTHO05D007932 1.9e-06 56.2 37 73.0
Nn5g27268 Nelumbo nucifera HOM05D006246 ORTHO05D007932 2.4e-06 55.8 58 55.2
EL10Ac1g00152 Beta vulgaris HOM05D006246 ORTHO05D007932 5.4e-06 54.7 57 61.4


User provided reference genes

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