Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 2.3e-51 205.3 106 100.0
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 7.0e-48 193.7 106 92.5
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 5.9e-47 190.7 106 89.6
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 5.9e-47 190.7 106 89.6
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 5.9e-47 190.7 106 89.6
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 5.9e-47 190.7 106 89.6
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.7e-47 190.3 106 90.6
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 7.7e-47 190.3 106 90.6
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 7.7e-47 190.3 106 90.6
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.7e-46 189.1 106 88.7
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 2.2e-46 188.7 106 89.6
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 2.9e-46 188.3 106 89.6
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 8.5e-46 186.8 106 88.7
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 8.5e-46 186.8 106 89.6
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 6.1e-44 180.6 106 87.7
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.4e-43 179.5 106 84.0
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 3.0e-43 178.3 99 88.9
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 5.7e-42 174.1 107 86.0
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 9.8e-42 173.3 106 82.1
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.7e-41 172.6 106 84.9
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 6.3e-41 170.6 107 85.0
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 6.3e-41 170.6 104 84.6
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.4e-40 168.7 107 83.2
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.1e-40 167.9 107 80.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.6e-39 166.0 107 80.4
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.6e-39 166.0 107 82.2
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 2.2e-33 145.6 106 67.9
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 65.1
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 65.1
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 4.1e-32 141.4 106 66.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.1e-32 141.4 106 65.1
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 5.4e-32 141.0 106 65.1
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 7.0e-32 140.6 106 65.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.0e-32 140.6 106 65.1
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.2e-31 139.8 105 63.8
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.2e-31 139.8 105 63.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.0e-31 139.0 106 63.2
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.0e-31 139.0 105 62.9
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 3.5e-31 138.3 105 62.9
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.5e-31 138.3 106 65.1
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.5e-31 138.3 106 65.1
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 4.6e-31 137.9 103 63.1
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 4.6e-31 137.9 103 63.1
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 5.9e-31 137.5 103 66.0
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.8e-31 137.1 106 65.1
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.0e-30 136.7 103 63.1
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.0e-30 136.7 103 64.1
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 64.2
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.3e-30 136.3 105 61.9
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.3e-30 135.6 88 73.9
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 105 62.9
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 103 65.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 103 65.0
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 3.9e-30 134.8 106 66.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 3.9e-30 134.8 103 62.1
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 5.0e-30 134.4 105 61.9
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 64.2
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 6.6e-30 134.0 89 71.9
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 6.6e-30 134.0 89 71.9
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 8.6e-30 133.7 107 63.6
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 8.6e-30 133.7 106 60.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 8.6e-30 133.7 105 62.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 62.3
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 3.3e-29 131.7 103 62.1
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.3e-29 131.7 98 64.3
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 3.3e-29 131.7 103 61.2
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 64.2
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 61.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 7.3e-29 130.6 106 60.4
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 61.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 105 60.0
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 7.3e-29 130.6 103 60.2
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 9.5e-29 130.2 105 60.0
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 9.5e-29 130.2 92 67.4
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.2e-28 129.8 89 69.7
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.6e-28 129.4 105 59.0
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.6e-28 129.4 90 64.4
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.1e-28 129.0 93 66.7
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 2.8e-28 128.6 90 65.6
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.8e-28 128.6 93 65.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.6e-28 128.3 91 68.1
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.7e-28 127.9 88 70.5
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 4.7e-28 127.9 105 61.9
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 4.7e-28 127.9 90 64.4
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 4.7e-28 127.9 96 62.5
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 6.2e-28 127.5 107 58.9
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 6.2e-28 127.5 105 59.0
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 6.2e-28 127.5 119 56.3
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 8.0e-28 127.1 105 61.9
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 8.0e-28 127.1 107 59.8
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.0e-27 126.7 106 57.5
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.8e-27 125.9 98 64.3
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.8e-27 125.9 106 57.5
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 2.3e-27 125.6 103 58.3
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 4.0e-27 124.8 103 58.3
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.5e-26 122.9 94 62.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.6e-26 122.1 90 66.7
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.4e-26 121.7 105 59.0
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 5.8e-26 120.9 107 58.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 5.8e-26 120.9 98 63.3
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 9.8e-26 120.2 91 62.6
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-25 119.8 84 69.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 2.9e-25 118.6 108 54.6
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 2.9e-25 118.6 84 64.3
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.7e-25 118.2 89 64.0
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.7e-25 118.2 90 62.2
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 8.3e-25 117.1 90 63.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.1e-24 116.7 106 56.6
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-24 116.3 106 54.7
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.9e-24 115.9 76 68.4
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 4.1e-24 114.8 89 66.3
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 7.0e-24 114.0 127 48.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.6e-23 112.8 86 65.1
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.6e-23 112.8 87 66.7
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.0e-23 112.5 106 56.6
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 2.7e-23 112.1 84 58.3
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 2.7e-23 112.1 91 62.6
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 3.5e-23 111.7 93 61.3
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.5e-23 111.7 87 65.5
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 3.5e-23 111.7 106 53.8
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 6.0e-23 110.9 87 59.8
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.9e-22 108.2 88 61.4
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.9e-22 108.2 88 61.4
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.6e-22 107.1 82 63.4
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 2.5e-21 105.5 107 52.3
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 1.2e-20 103.2 89 58.4
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.7e-20 101.3 89 59.6
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 2.3e-19 99.0 99 51.5
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 7.5e-18 94.0 74 59.5
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 2.2e-17 92.4 99 49.5
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 4.9e-17 91.3 74 62.2
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.4e-16 87.8 66 65.2
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.2e-15 86.7 86 51.2
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.6e-15 86.3 103 48.5
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 7.8e-15 84.0 56 66.1
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.3e-14 83.2 88 53.4
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.3e-14 82.4 74 56.8
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 8.6e-14 80.5 59 62.7
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.3e-13 78.2 66 57.6
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.6e-12 75.1 69 58.0
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.8e-11 72.8 61 55.7
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.1e-11 72.0 51 64.7
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 8.9e-11 70.5 50 70.0
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 2.2e-09 65.9 34 94.1
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.9e-09 65.5 57 59.6
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.4e-08 62.4 91 40.7
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 4.1e-08 61.6 80 46.2


User provided reference genes

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