Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.9e-79 297.7 150 100.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.4e-70 267.7 150 86.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-69 266.2 150 86.7
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-69 264.6 150 85.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.0e-69 264.2 150 84.7
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-68 263.5 150 84.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-68 262.7 149 83.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 5.0e-68 261.2 150 84.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 5.0e-68 261.2 150 84.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-67 260.0 150 84.0
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 8.1e-66 253.8 149 81.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 3.1e-65 251.9 162 77.8
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.9e-65 250.4 150 80.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 3.4e-64 248.4 150 80.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.4e-64 248.4 150 80.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 7.5e-64 247.3 150 80.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.7e-63 246.1 150 78.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 4.9e-63 244.6 147 77.6
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.9e-62 242.7 150 77.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.4e-62 242.3 150 76.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.2e-62 241.9 150 76.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.2e-62 241.9 150 76.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.2e-62 241.9 150 76.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 4.1e-62 241.5 157 76.4
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.8e-61 237.3 147 76.9
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.8e-61 237.3 147 77.6
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 7.8e-61 237.3 160 73.8
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 74.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.3e-60 235.7 150 74.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.9e-60 235.0 150 74.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-59 233.0 161 73.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.5e-59 232.3 149 73.8
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.3e-59 231.9 150 74.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 1.6e-58 229.6 150 72.7
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.4e-57 226.5 148 73.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 71.3
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 5.2e-57 224.6 147 74.1
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 73.3
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.0e-56 222.6 148 70.9
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 68.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 9.9e-56 220.3 149 69.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 68.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 68.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 68.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 68.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 66.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 67.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 66.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 67.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.0
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 67.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 65.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.2e-53 213.4 148 68.9
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 66.7
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 66.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.6e-53 213.0 135 74.1
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 66.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 64.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 66.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.5e-53 211.8 149 65.8
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 4.6e-53 211.5 148 65.5
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 65.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 67.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 64.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 66.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 64.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 66.7
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.9e-52 208.4 149 67.1
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 66.0
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.5e-51 206.5 181 57.5
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 64.7
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 64.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.3e-51 205.3 151 63.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 3.3e-51 205.3 147 66.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 7.3e-51 204.1 149 64.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 66.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.6e-50 203.0 149 65.1
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 66.4
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 66.4
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 66.4
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.1e-50 202.6 150 63.3
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.8e-50 202.2 145 65.5
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.8e-50 202.2 145 65.5
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.6e-50 201.8 143 65.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 64.6
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 63.9
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.7e-50 201.4 143 65.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 4.7e-50 201.4 149 61.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 8.1e-50 200.7 147 63.9
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.1e-50 200.7 148 62.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 62.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.4e-49 199.9 150 62.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 61.1
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 63.8
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 9.0e-49 197.2 147 63.3
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 9.0e-49 197.2 143 62.2
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 61.7
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 61.1
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 63.8
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.6e-48 195.7 150 60.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 4.4e-48 194.9 149 61.1
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 5.8e-48 194.5 149 61.1
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 5.8e-48 194.5 140 62.1
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 7.6e-48 194.1 150 63.3
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.9e-48 193.7 150 61.3
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 61.1
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.2e-47 192.6 149 58.4
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.2e-47 192.6 149 60.4
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 4.9e-47 191.4 150 59.3
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.9e-47 191.4 152 59.9
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 8.4e-47 190.7 170 57.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.4e-46 189.9 150 60.0
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.4e-46 189.9 148 60.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.3e-46 187.2 144 59.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 9.3e-46 187.2 149 61.1
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 9.3e-46 187.2 161 55.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 59.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.6e-45 184.9 137 63.5
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-44 183.3 144 57.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-44 183.0 144 57.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.0e-44 182.2 153 63.4
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.9e-44 181.8 141 59.6
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 5.1e-44 181.4 222 44.6
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.3e-42 176.8 150 54.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.3e-42 176.8 151 62.9
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.3e-42 176.8 150 54.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.6e-42 176.4 148 59.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-42 175.6 151 64.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.8e-42 175.6 144 55.6
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 8.1e-42 174.1 140 56.4
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.4e-41 173.3 143 57.3
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.8e-41 172.9 141 57.4
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-41 172.2 143 54.5
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-41 172.2 151 53.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 3.1e-41 172.2 143 54.5
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 5.3e-41 171.4 193 46.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.5e-40 169.9 142 62.7
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.0e-36 155.6 149 51.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-33 146.4 108 61.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-33 146.4 108 61.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 5.3e-33 144.8 149 51.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.9e-33 144.4 105 61.9
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 9.0e-33 144.1 128 57.0
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 9.0e-33 144.1 128 57.0
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.7e-31 139.8 99 67.7
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.4e-30 136.0 133 51.1
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.2e-30 135.2 89 74.2
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.5e-30 134.8 89 69.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.5e-30 134.8 89 73.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.6e-29 133.3 89 70.8
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.5e-27 126.7 145 44.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.3e-27 125.2 138 49.3
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-26 123.2 88 63.6
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.4e-25 119.4 82 67.1
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 9.0e-25 117.5 149 43.6
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 9.0e-25 117.5 144 42.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.3e-23 113.6 86 58.1
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.5e-21 105.5 139 41.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.9e-19 99.8 138 34.1
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 5.3e-17 91.7 52 82.7
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.5e-16 90.1 128 29.7
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 5.9e-16 88.2 144 36.8
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.9e-15 85.9 72 56.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.9e-14 83.2 102 39.2
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.2e-14 82.0 139 28.1
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-13 80.5 39 89.7
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.0e-12 75.9 85 45.9
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.2e-10 69.7 104 28.8
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.2e-10 67.8 82 48.8
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 3.1e-09 65.9 127 25.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.9e-09 64.7 81 39.5
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.6e-08 62.8 130 24.6
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.0e-07 60.8 46 63.0
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 2.2e-07 59.7 49 65.3
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 5.0e-07 58.5 49 63.3
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 6.5e-07 58.2 49 63.3


User provided reference genes

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