Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.3e-44 183.0 108 100.0
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 4.6e-31 137.9 104 80.8
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 5.5e-24 114.4 105 71.4
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 5.5e-24 114.4 105 71.4
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.4e-22 109.8 103 69.9
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 3.9e-22 108.2 103 67.0
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 5.1e-22 107.8 103 69.9
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.7e-20 102.8 103 67.0
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.7e-20 102.8 103 67.0
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 6.3e-20 100.9 99 65.7
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 2.4e-19 99.0 65 75.4
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 2.4e-19 99.0 65 75.4
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.3e-19 97.8 101 57.4
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 6.9e-19 97.4 103 66.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 6.9e-19 97.4 103 66.0
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 1.7e-17 92.8 103 62.1
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.1e-15 85.9 101 50.5
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 4.7e-15 84.7 103 58.3
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 5.2e-14 81.3 100 44.0
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 8.8e-14 80.5 103 50.5
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 3.3e-13 78.6 79 49.4
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 4.4e-13 78.2 103 47.6
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 4.4e-13 78.2 75 54.7
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-12 76.6 98 41.8
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-12 76.6 71 53.5
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-12 76.6 98 41.8
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.3e-12 76.6 98 42.9
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.3e-12 76.6 100 43.0
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.7e-12 76.3 102 43.1
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.2e-12 75.9 103 40.8
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.2e-12 75.9 103 40.8
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 2.8e-12 75.5 106 53.8
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.8e-12 75.5 98 48.0
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 2.8e-12 75.5 99 41.4
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 3.7e-12 75.1 77 55.8
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.7e-12 75.1 104 43.3
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.8e-12 74.7 98 41.8
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 4.8e-12 74.7 72 51.4
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.3e-12 74.3 70 51.4
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 8.2e-12 73.9 101 41.6
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 8.2e-12 73.9 103 40.8
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.1e-11 73.6 103 39.8
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.4e-11 73.2 100 44.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.8e-11 72.8 102 39.2
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.8e-11 72.8 100 41.0
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 2.4e-11 72.4 100 43.0
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 3.1e-11 72.0 108 45.4
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 4.1e-11 71.6 102 43.1
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 7.0e-11 70.9 98 41.8
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.0e-11 70.9 72 50.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 7.0e-11 70.9 101 48.5
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 9.1e-11 70.5 45 73.3
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 9.1e-11 70.5 82 45.1
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.6e-10 69.7 79 45.6
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.6e-10 69.7 71 53.5
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 2.0e-10 69.3 98 38.8
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.6e-10 68.9 71 53.5
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.6e-10 68.9 71 53.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 2.6e-10 68.9 98 42.9
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 3.5e-10 68.6 69 49.3
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 3.5e-10 68.6 66 54.5
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 5.9e-10 67.8 69 49.3
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 5.9e-10 67.8 98 46.9
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 7.7e-10 67.4 98 38.8
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 7.7e-10 67.4 82 42.7
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-09 67.0 69 53.6
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.0e-09 67.0 102 42.2
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.3e-09 66.6 69 53.6
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.3e-09 66.6 69 53.6
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.3e-09 66.6 69 53.6
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.3e-09 66.6 98 37.8
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.3e-09 66.6 70 50.0
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.3e-09 66.6 101 38.6
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.2e-09 65.9 101 36.6
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 2.2e-09 65.9 69 53.6
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 2.9e-09 65.5 70 47.1
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 2.9e-09 65.5 100 45.0
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 2.9e-09 65.5 69 46.4
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 5.0e-09 64.7 54 57.4
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 6.5e-09 64.3 45 66.7
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 6.5e-09 64.3 69 47.8
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 6.5e-09 64.3 69 47.8
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 6.5e-09 64.3 70 47.1
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 6.5e-09 64.3 69 50.7
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 8.5e-09 63.9 61 50.8
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.1e-08 63.5 79 44.3
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.1e-08 63.5 73 46.6
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 1.5e-08 63.2 63 50.8
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 1.5e-08 63.2 102 37.3
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.9e-08 62.8 100 41.0
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.5e-08 62.4 76 42.1
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 3.2e-08 62.0 58 55.2
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.2e-08 61.6 79 41.8
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 5.5e-08 61.2 79 44.3
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 7.2e-08 60.8 106 34.0
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 7.2e-08 60.8 134 31.3
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 9.4e-08 60.5 101 34.7
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.2e-07 60.1 65 47.7
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 1.6e-07 59.7 59 52.5
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 2.1e-07 59.3 59 52.5
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.7e-07 58.9 105 41.0
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 3.6e-07 58.5 101 37.6
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.6e-07 58.5 103 40.8
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 6.1e-07 57.8 104 35.6
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 8.0e-07 57.4 70 41.4
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.0e-06 57.0 100 37.0
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 2.3e-06 55.8 72 38.9
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.0e-06 55.5 69 49.3
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.0e-06 55.5 84 36.9
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 4.0e-06 55.1 66 45.5
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 5.2e-06 54.7 71 39.4
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 5.2e-06 54.7 101 34.7
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 6.7e-06 54.3 81 42.0
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 8.8e-06 53.9 109 33.0
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 8.8e-06 53.9 78 41.0


User provided reference genes

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