Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 2.5e-132 476.9 240 100.0
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.0e-85 322.0 241 70.1
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 5.7e-81 306.2 205 77.6
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-80 303.9 210 74.8
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 4.5e-78 296.6 205 74.6
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.3e-76 290.4 205 74.6
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.3e-74 284.3 205 73.2
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 1.3e-61 241.9 205 62.9
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 3.9e-61 240.4 205 63.4
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 5.0e-61 240.0 205 62.4
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 8.6e-61 239.2 200 63.0
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 5.6e-60 236.5 205 62.4
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 9.5e-60 235.7 205 62.0
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 6.0e-54 216.5 208 58.2
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.0e-45 189.1 221 48.0
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 3.9e-45 187.2 235 46.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 1.1e-44 185.7 235 46.4
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 9.6e-44 182.6 243 44.0
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.4e-42 178.7 220 45.5
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.2e-41 175.6 222 45.0
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.4e-41 174.1 245 44.1
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 3.4e-41 174.1 244 43.4
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 7.6e-41 172.9 206 45.6
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.3e-40 172.2 227 43.6
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.7e-40 171.8 245 43.7
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.4e-39 168.7 230 43.9
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.9e-39 168.3 240 37.5
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 3.2e-39 167.5 99 84.8
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 4.2e-39 167.2 216 42.1
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.6e-38 165.2 222 42.8
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 3.0e-37 161.0 223 41.7
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 3.9e-37 160.6 205 43.9
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 3.3e-36 157.5 220 42.3
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 3.3e-36 157.5 220 41.8
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 4.3e-36 157.1 196 48.5
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 7.3e-36 156.4 219 41.6
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 9.6e-36 156.0 244 41.8
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.1e-35 154.8 243 37.9
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 8.1e-35 152.9 230 40.4
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 8.1e-35 152.9 219 38.8
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 1.4e-34 152.1 196 46.4
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.8e-34 151.8 220 41.4
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 3.1e-34 151.0 189 43.9
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 9.0e-34 149.4 244 37.3
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.0e-34 149.4 224 40.2
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 2.0e-33 148.3 195 46.2
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.4e-33 147.5 189 42.3
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 3.4e-33 147.5 184 45.7
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 7.6e-33 146.4 191 45.5
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 7.6e-33 146.4 194 43.8
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.6e-33 146.4 243 39.1
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.2e-32 144.8 240 37.1
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 1.9e-31 141.7 194 41.2
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 3.2e-31 141.0 198 41.9
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 5.4e-31 140.2 192 40.6
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 9.3e-31 139.4 189 44.4
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.7e-30 137.9 190 40.0
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 4.6e-30 137.1 226 36.3
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 7.9e-30 136.3 205 37.6
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.9e-29 134.0 207 37.2
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 5.1e-29 133.7 246 35.8
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.5e-28 132.1 207 37.7
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.9e-28 131.7 202 37.6
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.5e-28 131.3 208 38.0
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.5e-28 131.3 205 41.5
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.3e-28 130.6 196 42.3
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 7.4e-28 129.8 201 42.8
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 7.4e-28 129.8 207 37.2
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 7.4e-28 129.8 206 41.7
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-27 129.0 192 39.6
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.3e-27 129.0 181 43.6
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.8e-27 127.9 201 37.3
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.8e-27 127.9 195 42.1
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 3.7e-27 127.5 174 43.7
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 3.7e-27 127.5 191 37.7
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.8e-27 127.1 197 40.6
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.1e-26 125.9 178 44.9
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.5e-25 122.1 197 36.0
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.4e-25 120.9 195 35.9
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.8e-25 120.2 142 46.5
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.3e-24 119.0 194 37.1
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.3e-24 119.0 169 36.7
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.7e-24 118.6 174 39.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 1.7e-24 118.6 159 45.3
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.8e-24 117.5 198 35.4
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.4e-23 115.5 196 34.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.9e-23 115.2 209 37.3
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 4.2e-23 114.0 223 30.5
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 5.5e-23 113.6 201 34.3
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 9.3e-23 112.8 133 51.1
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.6e-22 112.1 206 35.9
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 6.0e-22 110.2 179 38.5
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 7.9e-22 109.8 155 41.3
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.3e-21 109.0 140 39.3
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 3.0e-21 107.8 197 34.5
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.9e-21 107.5 174 42.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 5.1e-21 107.1 176 36.4
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 6.7e-21 106.7 172 37.2
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 1.1e-20 105.9 151 43.0
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.1e-20 105.9 90 54.4
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.9e-20 105.1 186 32.8
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 4.3e-20 104.0 193 32.6
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.1e-19 101.7 123 47.2
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 3.7e-19 100.9 192 36.5
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 8.2e-19 99.8 187 34.8
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.1e-18 99.4 197 34.0
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 1.1e-18 99.4 187 34.8
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 1.8e-18 98.6 161 37.9
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.8e-18 98.6 150 36.0
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.8e-18 98.6 174 33.9
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 3.1e-18 97.8 189 32.8
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 6.9e-18 96.7 95 52.6
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 9.0e-18 96.3 88 53.4
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 9.0e-18 96.3 160 38.1
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 2.0e-17 95.1 185 35.1
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 2.0e-17 95.1 153 39.2
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.7e-16 92.0 175 32.6
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.9e-16 90.5 166 34.3
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 6.5e-16 90.1 166 34.3
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 8.4e-16 89.7 181 29.3
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.9e-15 88.6 188 30.9
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.5e-15 88.2 104 43.3
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 5.5e-15 87.0 200 30.5
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.1e-14 85.1 187 30.5
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 2.7e-14 84.7 129 38.0
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 4.6e-14 84.0 171 31.0
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 4.6e-14 84.0 156 32.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.9e-14 83.2 191 29.8
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.8e-13 82.0 163 33.7
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.0e-13 81.3 168 30.4
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 1.1e-12 79.3 60 63.3
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.1e-12 79.3 185 31.4
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.9e-12 78.6 148 33.1
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.8e-11 74.7 78 47.4
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 8.2e-11 73.2 203 27.6
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 8.2e-11 73.2 160 32.5
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.4e-10 71.6 155 31.0
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 2.4e-10 71.6 160 31.9
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.1e-10 70.9 185 31.4
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 5.3e-10 70.5 68 45.6
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 6.9e-10 70.1 131 34.4
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.2e-09 69.3 241 25.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 7.7e-09 66.6 217 26.3
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.0e-08 66.2 153 28.1
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.0e-08 66.2 174 31.0
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.0e-08 66.2 91 36.3
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.7e-08 65.5 219 27.4
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 2.2e-08 65.1 167 29.3
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 3.8e-08 64.3 169 25.4
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 3.8e-08 64.3 115 34.8
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 9.4e-07 59.7 125 31.2
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 1.6e-06 58.9 82 42.7
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 2.7e-06 58.2 157 27.4
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 2.7e-06 58.2 55 52.7
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 2.7e-06 58.2 170 30.0
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 2.7e-06 58.2 111 32.4
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 2.7e-06 58.2 166 25.3
SEGI_04056 Sequoiadendron giganteum HOM05D004255 ORTHO05D004815 2.7e-06 58.2 191 27.7
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 3.6e-06 57.8 126 31.7
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 4.6e-06 57.4 154 26.0
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 6.1e-06 57.0 215 26.5
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 7.9e-06 56.6 157 26.8
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 7.9e-06 56.6 148 26.4
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 7.9e-06 56.6 56 44.6


User provided reference genes

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