Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 9.0e-162 573.5 294 100.0
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 6.7e-141 504.2 297 89.2
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 4.8e-139 498.0 298 87.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 8.2e-139 497.3 298 87.2
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.4e-138 495.7 298 87.2
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 5.0e-136 488.0 316 82.0
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-134 483.4 316 81.6
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.7e-134 482.3 298 86.2
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.8e-130 469.5 296 84.8
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 4.1e-130 468.4 296 84.5
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.7e-128 463.0 298 83.6
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-128 462.6 294 83.7
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 5.0e-128 461.5 298 84.2
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.5e-127 459.1 296 83.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 5.5e-127 458.0 294 82.0
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-126 456.8 298 82.2
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.4e-124 448.4 252 92.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.3e-123 446.8 297 77.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.8e-123 445.7 303 77.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.8e-122 443.0 303 76.6
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.4e-122 442.6 268 87.3
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 7.0e-122 441.0 304 77.3
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 9.1e-122 440.7 299 77.9
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.0e-121 439.5 304 77.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.5e-121 438.7 303 76.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 4.5e-121 438.3 299 75.9
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.0e-120 437.2 303 76.2
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.0e-120 437.2 303 76.9
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.3e-120 436.8 302 76.5
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-120 436.0 297 75.4
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 3.8e-120 435.3 300 77.3
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 6.5e-120 434.5 295 76.6
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.1e-119 433.7 297 75.1
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.9e-119 433.0 270 85.2
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 4.2e-119 431.8 312 75.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.2e-119 431.8 300 75.3
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 5.5e-119 431.4 304 76.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 7.2e-119 431.0 274 83.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.7e-118 428.3 313 74.1
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.1e-118 427.9 298 75.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.8e-117 426.4 305 76.4
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.0e-117 425.2 304 74.3
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.0e-117 425.2 303 76.2
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.8e-117 424.1 304 74.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 8.8e-117 424.1 303 76.2
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.5e-116 423.3 297 76.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.4e-116 422.2 304 74.0
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.4e-116 422.2 304 73.7
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.4e-116 422.2 300 76.0
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 4.4e-116 421.8 296 75.0
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.7e-116 421.4 300 76.0
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.7e-115 418.7 301 74.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.7e-115 418.7 300 75.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.7e-115 418.7 300 73.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.3e-115 417.9 303 73.9
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.4e-114 416.8 304 73.4
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.1e-114 415.6 293 74.7
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 4.1e-114 415.2 300 73.0
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.1e-114 414.1 293 74.4
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.6e-113 413.3 306 71.9
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.0e-113 412.9 290 75.2
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.5e-113 411.8 293 74.1
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.5e-113 411.8 301 74.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-112 410.2 294 74.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.3e-112 410.2 290 75.5
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-112 409.8 295 76.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.2e-112 409.5 292 75.7
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 8.5e-112 407.5 299 72.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.5e-111 406.0 273 77.7
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.5e-111 404.8 299 73.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.2e-111 404.4 299 73.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 7.2e-111 404.4 302 72.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 9.4e-111 404.1 302 72.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.2e-110 403.7 295 72.5
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.1e-110 402.9 295 72.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 6.1e-110 401.4 289 75.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 2.3e-109 399.4 294 73.8
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 4.0e-109 398.7 294 71.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 5.2e-109 398.3 290 74.1
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 9.8e-108 394.0 284 75.0
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 9.8e-108 394.0 303 71.0
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-107 393.3 293 70.3
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.2e-107 392.9 298 71.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.2e-107 392.9 295 71.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-107 392.9 294 70.4
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.2e-107 392.9 216 93.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.8e-107 392.5 275 74.5
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.8e-107 392.5 299 69.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 8.3e-107 391.0 293 70.0
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 8.3e-107 391.0 348 64.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.8e-106 389.8 293 71.3
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 4.1e-106 388.7 275 74.2
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 5.4e-106 388.3 275 74.2
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 7.0e-106 387.9 295 73.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 7.0e-106 387.9 283 74.6
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 2.0e-105 386.3 296 70.6
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 7.7e-105 384.4 284 73.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.7e-104 383.3 299 68.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.3e-104 382.9 275 73.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.8e-104 382.1 296 70.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 8.6e-104 380.9 289 71.6
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.6e-103 378.3 272 73.2
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 2.1e-102 376.3 272 72.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.6e-102 375.6 295 70.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.0e-101 372.1 302 68.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.7e-99 366.7 233 79.8
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.3e-99 364.4 293 67.2
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 8.3e-99 364.4 246 77.6
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.4e-98 363.6 243 78.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 2.4e-98 362.8 246 78.5
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.4e-98 362.8 254 76.0
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 5.9e-97 358.2 243 76.1
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.0e-96 355.9 304 63.8
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-95 353.6 246 76.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 7.3e-95 351.3 239 77.0
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.6e-94 350.1 253 72.3
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.0e-93 345.5 258 73.6
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.1e-90 335.5 286 64.0
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.1e-87 327.4 279 66.3
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 5.2e-85 318.5 278 65.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.0e-84 316.6 295 62.0
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.7e-83 312.4 224 75.0
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.7e-81 306.2 180 83.9
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 6.6e-80 301.6 216 75.0
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.2e-78 297.4 180 83.9
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.6e-78 297.0 243 63.8
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.8e-78 296.2 245 65.3
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.6e-78 295.8 238 70.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.8e-75 285.8 214 72.4
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.8e-75 285.8 302 53.0
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.0e-72 277.7 226 61.9
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 5.1e-72 275.4 306 52.0
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.3e-71 272.7 268 56.7
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.1e-70 270.0 207 65.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 3.1e-69 266.2 244 57.0
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 9.9e-68 261.2 224 61.6
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.4e-67 258.1 180 71.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 9.3e-66 254.6 254 58.7
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 5.1e-64 248.8 178 66.3
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.5e-60 237.3 164 73.8
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 8.4e-59 231.5 140 83.6
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.6e-57 227.3 253 55.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.9e-56 222.6 201 61.7
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 8.7e-48 194.9 279 41.2
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-46 191.0 175 62.9
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.3e-45 185.7 158 65.2
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.3e-40 171.0 143 66.4
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.7e-39 165.6 121 73.6
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-34 151.4 112 71.4
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.8e-30 136.7 80 83.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.5e-28 131.0 82 80.5
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 6.5e-27 125.6 64 93.8
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.6e-17 94.4 67 76.1
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.8e-14 83.6 88 54.5
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.8e-14 82.8 106 51.9
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.9e-12 75.9 90 50.0
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.9e-11 73.6 45 77.8
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 8.5e-11 72.0 116 45.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 3.2e-10 70.1 48 72.9


User provided reference genes

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