Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 7.4e-173 610.5 329 100.0
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.9e-99 366.7 333 64.0
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.9e-96 356.7 306 65.7
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 1.6e-90 337.0 265 68.7
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.3e-89 334.0 337 60.2
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.8e-89 333.6 338 60.4
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 9.6e-88 327.8 343 60.1
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.0e-86 322.4 312 60.3
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 7.9e-82 308.1 343 56.6
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 6.3e-79 298.5 331 58.0
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 9.0e-78 294.7 331 56.2
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 2.6e-77 293.1 334 57.8
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.8e-73 280.4 355 54.1
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.6e-69 266.5 310 58.4
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-67 260.8 353 52.7
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 2.7e-66 256.5 328 51.2
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 3.6e-66 256.1 358 52.2
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.8e-62 243.8 337 52.5
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.1e-59 234.6 313 50.5
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 4.7e-58 229.2 363 48.2
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.0e-57 226.5 344 49.7
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.5e-48 197.6 339 46.6
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.7e-47 194.1 187 63.6
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 3.5e-45 186.4 312 43.3
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 2.2e-44 183.7 310 42.9
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 2.5e-43 180.3 306 44.4
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.5e-43 180.3 148 69.6
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.2e-42 177.9 250 47.6
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 3.4e-40 169.9 301 42.5
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 3.7e-39 166.4 323 41.2
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.8e-39 166.0 304 43.4
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.8e-39 166.0 304 43.4
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.1e-38 164.9 356 38.5
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.4e-38 163.7 323 41.2
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 9.1e-38 161.8 290 41.0
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.2e-37 161.4 299 40.1
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.7e-37 160.2 272 41.9
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 3.5e-37 159.8 336 42.6
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 3.5e-37 159.8 250 43.2
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 5.9e-37 159.1 316 38.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 7.7e-37 158.7 338 40.2
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.0e-36 158.3 333 39.3
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.0e-36 158.3 153 62.1
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.9e-36 156.8 144 60.4
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.5e-35 153.7 320 36.6
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 4.2e-35 152.9 162 58.0
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 9.5e-35 151.8 239 44.4
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.6e-34 151.0 311 41.2
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.6e-34 151.0 249 44.6
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.8e-34 150.2 249 44.6
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 2.8e-34 150.2 297 40.4
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 3.6e-34 149.8 306 40.5
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 4.7e-34 149.4 323 39.0
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 6.1e-34 149.1 328 36.3
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 8.0e-34 148.7 164 58.5
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.0e-33 148.3 249 44.6
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.4e-33 147.9 163 53.4
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 1.8e-33 147.5 310 37.4
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 2.3e-33 147.1 204 47.1
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 4.0e-33 146.4 251 43.0
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 5.2e-33 146.0 307 39.4
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.5e-32 144.4 305 38.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 1.5e-32 144.4 368 36.1
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 2.0e-32 144.1 318 41.2
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 2.6e-32 143.7 276 41.3
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 3.4e-32 143.3 322 37.6
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 4.4e-32 142.9 254 43.7
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 5.7e-32 142.5 255 40.4
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 5.7e-32 142.5 161 52.8
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.7e-32 142.5 322 37.3
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 7.5e-32 142.1 163 51.5
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.3e-31 141.4 316 38.3
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 2.2e-31 140.6 244 42.2
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.8e-31 140.2 163 50.9
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 2.8e-31 140.2 148 54.7
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.9e-31 139.4 229 43.7
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 4.9e-31 139.4 298 37.2
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.1e-30 138.3 293 38.2
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.8e-30 137.5 280 40.7
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.4e-30 137.1 222 43.2
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 2.4e-30 137.1 278 38.1
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.1e-30 136.7 298 36.6
Thhalv10009331m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.1e-30 136.7 194 49.0
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 3.1e-30 136.7 149 54.4
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.1e-30 136.7 149 54.4
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.1e-30 136.7 149 54.4
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 3.1e-30 136.7 238 40.8
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 3.1e-30 136.7 297 37.0
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 3.1e-30 136.7 356 36.8
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 4.1e-30 136.3 145 59.3
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.6e-29 134.4 239 41.4
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 2.7e-29 133.7 293 36.2
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 7.8e-29 132.1 225 42.2
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 6.6e-28 129.0 296 36.5
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 2.5e-27 127.1 301 36.5
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.3e-27 126.7 295 35.9
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 9.5e-27 125.2 283 36.4
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.2e-26 124.8 291 34.7
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.8e-26 123.6 125 57.6
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.8e-26 123.6 214 43.9
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.0e-26 122.1 343 40.5
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 3.1e-25 120.2 275 36.0
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 3.1e-25 120.2 199 43.2
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 4.0e-25 119.8 199 42.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 4.0e-25 119.8 306 34.6
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.0e-25 119.8 328 33.8
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 4.0e-25 119.8 390 31.3
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 5.8e-24 115.9 264 35.6
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 9.8e-24 115.2 125 52.0
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 2.9e-23 113.6 276 39.9
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.2e-21 108.2 233 36.1
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.0e-21 107.5 208 43.8
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 2.0e-21 107.5 255 40.8
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.7e-21 107.1 108 56.5
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 7.8e-21 105.5 90 61.1
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.0e-20 105.1 86 62.8
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 3.0e-20 103.6 126 56.3
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.6e-20 102.4 301 32.2
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 2.1e-18 97.4 84 59.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.1e-17 95.1 269 32.3
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.8e-17 94.4 81 63.0
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.0e-16 90.9 302 32.1
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.3e-15 88.2 336 28.6
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 9.2e-14 82.0 199 36.7
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.1e-13 80.9 167 35.9
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.3e-12 78.2 314 28.0
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 2.3e-12 77.4 180 34.4
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 5.1e-12 76.3 282 31.2
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.1e-11 75.1 73 54.8
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 4.3e-11 73.2 251 33.5
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 7.3e-11 72.4 86 55.8
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 4.7e-10 69.7 278 29.9
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.1e-09 68.6 306 28.4
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.4e-09 68.2 298 28.5
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 5.2e-09 66.2 310 29.0
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 6.8e-09 65.9 55 60.0
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 8.9e-09 65.5 352 27.0
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 3.4e-08 63.5 42 69.0
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 1.7e-07 61.2 140 32.1
SMO137G0159 Selaginella moellendorffii HOM05D004925 ORTHO05D005643 2.9e-07 60.5 219 26.5
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 3.7e-07 60.1 130 39.2
BcaB03g16453 Brassica carinata HOM05D004925 ORTHO05D005643 3.2e-06 57.0 66 48.5
BcaB03g16452 Brassica carinata HOM05D004925 ORTHO05D005643 4.1e-06 56.6 63 50.8
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 7.1e-06 55.8 42 61.9


User provided reference genes

Program Settings