Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 4.8e-38 160.6 77 100.0
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.3e-24 115.9 74 75.7
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.1e-23 112.8 74 78.4
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 3.3e-23 111.3 74 77.0
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 3.3e-23 111.3 74 77.0
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 3.3e-23 111.3 74 77.0
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 7.4e-23 110.2 74 77.0
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.3e-22 109.4 74 75.7
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 1.3e-22 109.4 74 75.7
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 1.3e-22 109.4 74 75.7
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 2.4e-21 105.1 71 73.2
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.1e-21 104.8 74 73.0
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 6.9e-21 103.6 71 71.8
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 9.0e-21 103.2 71 71.8
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.2e-20 102.8 74 71.6
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 1.2e-20 102.8 74 70.3
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.2e-20 102.8 65 70.8
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.5e-20 102.4 77 71.4
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.6e-20 101.7 74 71.6
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 5.9e-20 100.5 74 70.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 7.6e-20 100.1 74 70.3
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 7.6e-20 100.1 71 69.0
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.7e-19 99.0 75 70.7
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 6.5e-19 97.1 74 66.2
AT1G05340 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 7.2e-18 93.6 74 66.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.2e-17 92.8 65 72.3
A10p04050 Brassica napus HOM05D002385 ORTHO05D002245 2.7e-17 91.7 74 63.5
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 3.6e-17 91.3 75 66.7
AL1G15140 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 7.9e-17 90.1 74 60.8
Sp1g04210 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.8e-16 89.0 75 60.0
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 9.7e-15 83.2 65 63.1
AL4G27560 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 4.8e-14 80.9 75 61.3
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-13 79.3 56 66.1
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.4e-13 79.3 56 66.1
AT2G32190 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.6e-12 75.1 60 66.7
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.7e-12 73.6 80 50.0
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.3e-11 72.8 71 56.3
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.5e-11 70.1 76 53.9
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.1e-10 69.7 71 54.9
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 1.9e-10 68.9 58 63.8
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 2.5e-10 68.6 76 53.9
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.5e-10 68.6 79 57.0
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.5e-10 68.6 77 50.6
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.5e-10 67.4 65 58.5
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 7.2e-10 67.0 73 54.8
C09p55310 Brassica napus HOM05D002385 ORTHO05D002245 9.4e-10 66.6 56 58.9
C09p55320 Brassica napus HOM05D002385 ORTHO05D002245 9.4e-10 66.6 56 58.9
BolC9t58392H Brassica oleracea HOM05D002385 ORTHO05D002245 9.4e-10 66.6 56 58.9
BolC9t58394H Brassica oleracea HOM05D002385 ORTHO05D002245 9.4e-10 66.6 56 58.9
Aa31LG1G19350 Aethionema arabicum HOM05D002385 ORTHO05D002245 2.1e-09 65.5 58 60.3
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 3.6e-09 64.7 80 53.8
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.6e-09 64.3 65 55.4
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.6e-09 64.3 81 49.4
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 6.1e-09 63.9 72 54.2
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.1e-09 63.9 81 50.6
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 7.9e-09 63.5 63 57.1
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.0e-08 63.2 64 54.7
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.8e-08 62.4 72 52.8
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.8e-08 62.4 79 48.1
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.8e-08 62.4 64 53.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 2.3e-08 62.0 75 49.3
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.3e-08 62.0 79 48.1
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 2.3e-08 62.0 68 52.9
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.3e-08 62.0 56 58.9
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.9e-08 61.2 78 44.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 3.9e-08 61.2 78 44.9
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.9e-08 61.2 67 50.7
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 3.9e-08 61.2 76 48.7
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 5.1e-08 60.8 68 54.4
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 6.7e-08 60.5 78 48.7
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 6.7e-08 60.5 48 58.3
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 8.8e-08 60.1 72 47.2
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 8.8e-08 60.1 65 50.8
BolC1t05607H Brassica oleracea HOM05D002385 ORTHO05D002245 1.1e-07 59.7 55 54.5
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.1e-07 59.7 56 57.1
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 1.5e-07 59.3 72 48.6
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.5e-07 59.3 66 53.0
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.5e-07 59.3 66 53.0
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 1.5e-07 59.3 79 46.8
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-07 59.3 66 53.0
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-07 59.3 66 53.0
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.0e-07 58.9 61 57.4
AL1G64310 Arabidopsis lyrata HOM05D014824 ORTHO05D002245 2.0e-07 58.9 59 55.9
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 2.6e-07 58.5 64 54.7
BraA10t43998Z Brassica rapa HOM05D002385 ORTHO05D002245 2.6e-07 58.5 55 52.7
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.6e-07 58.5 66 53.0
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.6e-07 58.5 71 47.9
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 3.3e-07 58.2 65 53.8
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 3.3e-07 58.2 91 44.0
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.3e-07 58.2 71 49.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.3e-07 58.2 71 49.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.3e-07 58.2 72 47.2
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.3e-07 58.2 72 47.2
BolC9t58393H Brassica oleracea HOM05D002385 ORTHO05D033827 4.4e-07 57.8 55 54.5
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 4.4e-07 57.8 64 51.6
CARHR045780 Cardamine hirsuta HOM05D014824 ORTHO05D002245 4.4e-07 57.8 57 56.1
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.4e-07 57.8 67 50.7
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.4e-07 57.8 71 47.9
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 4.4e-07 57.8 78 51.3
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 4.4e-07 57.8 77 50.6
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 5.7e-07 57.4 67 49.3
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 5.7e-07 57.4 67 49.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.7e-07 57.4 60 55.0
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 7.4e-07 57.0 72 45.8
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 7.4e-07 57.0 48 60.4
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 7.4e-07 57.0 69 58.0
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 7.4e-07 57.0 86 43.0
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 7.4e-07 57.0 72 47.2
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 9.7e-07 56.6 72 47.2
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 9.7e-07 56.6 72 47.2
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 9.7e-07 56.6 65 43.1
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 9.7e-07 56.6 73 49.3
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.3e-06 56.2 63 54.0
Thhalv10011923m.g Eutrema salsugineum HOM05D014824 ORTHO05D002245 1.3e-06 56.2 61 60.7
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 1.3e-06 56.2 78 44.9
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.3e-06 56.2 72 45.8
QL11p017947 Quercus lobata HOM05D002385 ORTHO05D002245 1.3e-06 56.2 82 41.5
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.3e-06 56.2 84 47.6
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 1.3e-06 56.2 64 48.4
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.7e-06 55.8 69 55.1
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.7e-06 55.8 69 55.1
BcaC08g43673 Brassica carinata HOM05D014824 ORTHO05D002245 1.7e-06 55.8 59 55.9
C06p10930 Brassica napus HOM05D014824 ORTHO05D002245 1.7e-06 55.8 59 55.9
BraSC56t46388Z Brassica rapa HOM05D014824 ORTHO05D002245 1.7e-06 55.8 59 55.9
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.7e-06 55.8 64 50.0
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.7e-06 55.8 72 47.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.7e-06 55.8 72 48.6
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 1.7e-06 55.8 73 49.3
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.2e-06 55.5 62 53.2
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 2.2e-06 55.5 75 46.7
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.2e-06 55.5 93 41.9
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 2.2e-06 55.5 68 48.5
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.8e-06 55.1 81 45.7
BcaB07g33174 Brassica carinata HOM05D014824 ORTHO05D002245 2.8e-06 55.1 58 53.4
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.8e-06 55.1 75 46.7
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.8e-06 55.1 68 52.9
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.8e-06 55.1 83 45.8
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 2.8e-06 55.1 67 52.2
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.7e-06 54.7 78 42.3
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 6.3e-06 53.9 77 40.3
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 6.3e-06 53.9 71 49.3
BcaB06g26327 Brassica carinata HOM05D002385 ORTHO05D002245 8.2e-06 53.5 47 53.2
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 8.2e-06 53.5 65 52.3
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 8.2e-06 53.5 78 44.9
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 8.2e-06 53.5 73 46.6
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 8.2e-06 53.5 67 47.8


User provided reference genes

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