Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 3.6e-175 618.2 334 100.0
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.8e-86 323.6 310 61.6
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 3.5e-85 319.3 318 61.6
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.6e-82 310.5 316 59.8
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.1e-78 297.7 310 60.0
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 3.2e-78 296.2 320 59.1
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 6.6e-76 288.5 316 55.7
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 3.4e-72 276.2 318 56.3
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 8.3e-71 271.6 305 57.7
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 2.7e-69 266.5 305 57.0
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 6.6e-68 261.9 304 55.9
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-62 244.6 305 54.4
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 5.4e-62 242.3 311 52.4
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 4.3e-43 179.5 178 60.7
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.6e-37 161.0 323 44.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 4.2e-22 109.8 194 42.8
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 2.1e-21 107.5 229 37.1
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.8e-20 104.4 222 36.0
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.8e-20 104.4 204 38.2
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 3.9e-20 103.2 194 39.2
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 8.7e-20 102.1 224 33.9
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.5e-19 101.3 197 39.1
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 3.3e-19 100.1 224 34.4
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 3.3e-19 100.1 193 36.8
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.3e-19 100.1 241 34.0
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 3.3e-19 100.1 220 36.8
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.3e-19 99.8 193 36.8
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 4.3e-19 99.8 199 40.2
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 5.7e-19 99.4 195 35.4
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 9.6e-19 98.6 247 33.2
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.3e-18 98.2 193 36.8
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-18 97.8 195 35.4
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.6e-18 97.8 193 36.3
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 1.6e-18 97.8 190 36.3
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.8e-18 97.1 200 36.5
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 6.3e-18 95.9 193 36.3
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 6.3e-18 95.9 198 39.9
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 8.2e-18 95.5 205 37.1
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 8.2e-18 95.5 281 32.0
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.2e-18 95.5 193 36.3
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.1e-17 95.1 192 39.6
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.1e-17 95.1 211 35.1
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.4e-17 94.7 205 37.1
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.4e-17 94.7 227 34.4
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.8e-17 94.4 240 34.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 1.8e-17 94.4 191 36.1
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.0e-16 90.9 193 36.8
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 5.9e-16 89.4 196 35.7
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 5.9e-16 89.4 194 34.5
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 7.6e-16 89.0 198 35.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 7.6e-16 89.0 193 36.3
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 7.6e-16 89.0 189 35.4
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 1.3e-15 88.2 205 33.7
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.7e-15 87.8 297 30.6
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.9e-15 87.0 265 31.3
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 3.8e-15 86.7 200 32.5
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.0e-15 86.3 229 28.4
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 1.9e-14 84.3 194 36.6
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.5e-14 84.0 201 35.3
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.5e-14 84.0 199 32.7
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.5e-14 84.0 188 35.6
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.5e-14 84.0 188 35.6
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 3.2e-14 83.6 200 33.5
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 3.2e-14 83.6 203 33.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-14 83.2 259 29.3
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 4.2e-14 83.2 184 34.8
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.5e-14 82.8 227 30.8
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 7.2e-14 82.4 189 33.3
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 7.2e-14 82.4 191 33.0
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 7.2e-14 82.4 205 34.6
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 9.3e-14 82.0 210 33.8
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.2e-13 81.6 188 31.9
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.2e-13 81.6 199 33.2
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.6e-13 81.3 298 27.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.7e-13 80.5 196 33.7
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 2.7e-13 80.5 205 33.2
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 2.7e-13 80.5 176 38.6
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 3.6e-13 80.1 179 35.8
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 6.1e-13 79.3 267 30.0
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.3e-12 78.2 229 30.6
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.3e-12 77.4 186 32.8
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.3e-12 77.4 186 32.8
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.3e-12 77.4 200 36.5
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.9e-12 76.6 221 31.7
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 5.1e-12 76.3 180 35.6
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 6.7e-12 75.9 227 29.5
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 8.7e-12 75.5 229 31.4
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 8.7e-12 75.5 307 28.0
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.1e-11 75.1 231 26.4
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.9e-11 74.3 203 32.5
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 2.5e-11 73.9 235 26.0
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 2.5e-11 73.9 187 35.3
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 3.3e-11 73.6 201 34.3
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.7e-11 72.8 188 30.3
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 7.4e-11 72.4 256 28.5
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.4e-11 72.4 190 33.2
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 9.7e-11 72.0 137 35.8
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 9.7e-11 72.0 190 33.7
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.3e-10 71.6 221 31.2
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.6e-10 71.2 190 33.2
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.2e-10 70.9 237 25.7
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 2.2e-10 70.9 169 34.3
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.8e-10 69.7 237 24.1
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 6.3e-10 69.3 188 33.0
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.3e-10 69.3 191 30.9
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 8.2e-10 68.9 59 55.9
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 1.4e-09 68.2 176 34.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.8e-09 67.8 180 33.3
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 3.1e-09 67.0 57 52.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 5.3e-09 66.2 180 31.7
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 6.9e-09 65.9 168 31.5
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.2e-08 65.1 143 30.8
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.5e-08 64.7 165 31.5
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.0e-08 64.3 231 27.3
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 2.6e-08 63.9 184 33.2
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 3.4e-08 63.5 200 28.5
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.5e-08 63.2 190 32.6
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 4.5e-08 63.2 184 28.3
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.3e-07 61.6 207 27.5
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 2.2e-07 60.8 172 32.6
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.9e-07 60.5 189 27.5
Thhalv10029243m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.9e-07 60.5 64 57.8
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.8e-07 60.1 230 26.5
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 5.0e-07 59.7 187 32.1
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 6.5e-07 59.3 189 29.6
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.9e-06 57.8 307 26.1
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 5.5e-06 56.2 190 28.9


User provided reference genes

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