Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 4.6e-74 281.2 146 100.0
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.8e-63 245.4 146 89.7
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 1.4e-62 243.0 146 89.0
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.8e-62 242.7 147 89.8
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 2.4e-62 242.3 146 87.7
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 2.0e-61 239.2 147 89.1
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 2.6e-61 238.8 146 87.0
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 9.9e-61 236.9 146 87.0
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 1.6e-58 229.6 147 85.0
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 4.6e-58 228.0 147 84.4
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 1.3e-57 226.5 147 84.4
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 1.1e-56 223.4 148 83.8
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.9e-56 222.6 148 83.1
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 2.5e-56 222.2 143 83.2
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 5.6e-56 221.1 146 82.2
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 1.6e-55 219.5 147 78.2
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 4.0e-54 214.9 145 84.1
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 9.3e-51 203.8 148 79.7
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 2.1e-50 202.6 148 77.7
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 2.1e-50 202.6 148 77.7
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 9.6e-48 193.7 149 75.8
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 3.7e-47 191.8 156 69.2
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 2.4e-46 189.1 146 71.9
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 2.4e-46 189.1 152 68.4
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 5.3e-46 188.0 140 73.6
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 6.9e-46 187.6 132 74.2
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 2.6e-45 185.7 152 67.1
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 3.4e-45 185.3 144 66.7
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 7.6e-45 184.1 122 77.9
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 7.6e-45 184.1 122 77.9
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 1.7e-44 183.0 138 72.5
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 2.2e-44 182.6 139 69.8
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 4.9e-44 181.4 144 65.3
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 4.9e-44 181.4 150 70.0
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 4.9e-44 181.4 117 80.3
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 6.5e-44 181.0 144 65.3
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 6.5e-44 181.0 111 82.0
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 8.4e-44 180.6 137 73.7
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.4e-43 179.9 141 70.9
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 4.2e-43 178.3 123 78.9
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 5.5e-43 177.9 151 68.9
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 7.1e-43 177.6 139 66.9
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 9.3e-43 177.2 144 63.9
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.2e-42 176.8 148 68.2
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 1.2e-42 176.8 130 72.3
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.2e-42 176.8 120 75.8
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 1.2e-42 176.8 140 67.1
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 2.1e-42 176.0 139 71.2
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 2.1e-42 176.0 134 73.1
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.7e-42 175.6 151 68.2
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 2.7e-42 175.6 117 75.2
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 3.5e-42 175.3 123 78.9
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 3.5e-42 175.3 151 68.2
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 3.5e-42 175.3 122 73.8
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 7.9e-42 174.1 134 71.6
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 1.0e-41 173.7 118 75.4
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 1.0e-41 173.7 139 71.2
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.0e-41 173.7 118 76.3
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 1.0e-41 173.7 124 73.4
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 1.3e-41 173.3 124 76.6
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 1.3e-41 173.3 118 76.3
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 1.8e-41 172.9 144 65.3
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 1.8e-41 172.9 152 67.8
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 2.3e-41 172.6 142 66.9
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 3.0e-41 172.2 132 72.7
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 3.0e-41 172.2 132 72.7
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 3.0e-41 172.2 150 67.3
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 3.0e-41 172.2 118 75.4
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 3.9e-41 171.8 118 75.4
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 5.1e-41 171.4 123 74.8
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 5.1e-41 171.4 118 76.3
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 6.7e-41 171.0 118 74.6
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 8.7e-41 170.6 123 78.0
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 1.1e-40 170.2 118 75.4
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.1e-40 170.2 119 76.5
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.5e-40 169.9 148 64.9
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.5e-40 169.9 116 77.6
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 2.5e-40 169.1 139 65.5
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 3.3e-40 168.7 126 73.8
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 3.3e-40 168.7 142 63.4
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 5.7e-40 167.9 150 65.3
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 5.7e-40 167.9 150 66.0
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 7.4e-40 167.5 124 72.6
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 7.4e-40 167.5 117 74.4
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 7.4e-40 167.5 144 68.1
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 9.7e-40 167.2 122 74.6
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 9.7e-40 167.2 118 74.6
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.3e-39 166.8 150 66.0
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 1.6e-39 166.4 133 69.2
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 4.8e-39 164.9 117 73.5
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 8.2e-39 164.1 143 65.0
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 1.8e-38 162.9 143 65.7
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 1.8e-38 162.9 144 64.6
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 2.4e-38 162.5 120 71.7
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 2.4e-38 162.5 120 71.7
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 3.1e-38 162.2 122 70.5
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 5.3e-38 161.4 140 66.4
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 6.9e-38 161.0 135 65.2
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 6.9e-38 161.0 122 69.7
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 1.2e-37 160.2 117 74.4
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 7.7e-37 157.5 136 67.6
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.7e-36 156.4 187 54.0
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 2.9e-36 155.6 151 58.9
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 6.5e-36 154.5 133 66.9
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 2.5e-35 152.5 138 59.4
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 2.5e-35 152.5 135 65.9
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 4.2e-35 151.8 140 55.7
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 7.2e-35 151.0 122 67.2
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 2.1e-34 149.4 78 92.3
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 3.6e-34 148.7 148 55.4
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 3.0e-33 145.6 78 91.0
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 8.8e-33 144.1 123 62.6
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 9.7e-32 140.6 82 82.9
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 4.1e-30 135.2 75 85.3
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 4.1e-30 135.2 111 66.7
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 1.5e-29 133.3 79 82.3
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 1.4e-25 120.2 120 55.0
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 8.8e-25 117.5 122 54.9
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 5.7e-24 114.8 142 52.8
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 1.3e-23 113.6 93 65.6
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 5.3e-22 108.2 113 50.4
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 1.0e-20 104.0 75 64.0
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 2.9e-20 102.4 120 52.5
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 5.0e-20 101.7 78 65.4
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 2.6e-16 89.4 77 55.8
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 1.3e-15 87.0 126 42.1
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 7.5e-08 61.2 36 86.1
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 5.3e-06 55.1 72 40.3


User provided reference genes

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