Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.8e-241 837.0 418 100.0
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-118 429.5 442 55.2
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-111 407.5 441 54.2
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.9e-110 403.7 440 53.9
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.3e-110 402.5 442 53.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-109 401.0 457 53.2
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 3.4e-107 392.9 444 53.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-106 390.6 442 53.2
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.9e-106 389.0 442 52.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.9e-105 387.1 467 50.7
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.1e-104 383.6 424 54.2
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.9e-102 377.1 438 51.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.9e-102 377.1 378 56.9
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.6e-99 366.7 434 50.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 4.5e-99 365.9 443 50.1
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-98 364.4 433 50.3
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 2.2e-98 363.6 442 50.7
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.1e-97 358.6 430 50.2
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-91 340.1 434 47.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.1e-88 330.5 428 49.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-88 329.7 390 51.3
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.0e-87 326.6 431 47.1
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-86 323.2 423 50.4
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.7e-86 322.4 426 48.4
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-85 320.9 427 47.8
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.1e-85 320.5 379 50.7
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 6.3e-85 318.9 427 47.8
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-84 318.2 431 46.4
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.6e-83 313.5 438 46.3
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.2e-81 306.6 429 45.2
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 7.2e-81 305.4 429 47.6
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-80 303.5 468 43.4
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.6e-80 303.1 429 46.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-79 301.2 429 44.8
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.3e-79 300.4 429 44.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-77 294.3 370 48.1
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 4.8e-77 292.7 444 43.5
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.4e-76 290.4 390 47.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.5e-75 287.7 461 41.9
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-73 280.0 424 42.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.4e-71 274.6 458 40.2
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.3e-71 273.9 458 40.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.9e-71 273.1 458 40.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.3e-70 270.0 468 39.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.4e-70 268.9 468 39.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.4e-70 268.9 468 39.1
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.2e-69 267.3 465 38.7
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 4.8e-69 266.2 402 41.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 4.8e-69 266.2 471 39.5
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-68 264.2 387 45.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.1e-68 263.5 467 39.0
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.1e-68 263.1 413 40.9
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.3e-68 262.7 468 38.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.9e-68 262.3 412 41.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.6e-67 260.4 466 37.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.6e-67 260.4 465 37.8
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.0e-66 258.5 468 36.3
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.2e-66 257.3 467 38.1
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.2e-66 257.3 466 37.3
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.2e-66 257.3 467 37.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 3.8e-66 256.5 469 36.9
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.8e-66 256.5 469 36.9
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 3.8e-66 256.5 467 37.9
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 6.5e-66 255.8 465 37.6
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.1e-65 255.0 469 36.7
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.9e-65 254.2 433 40.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.2e-65 253.4 401 39.2
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.2e-65 253.1 466 37.1
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.2e-65 253.1 467 37.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.2e-64 251.5 467 37.5
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.7e-64 249.6 401 38.7
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 6.1e-64 249.2 479 37.2
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 6.1e-64 249.2 467 37.9
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 7.9e-64 248.8 474 36.5
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.3e-63 247.3 402 39.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.0e-63 246.9 465 37.2
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 6.7e-63 245.7 410 39.3
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 6.7e-63 245.7 476 37.2
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 8.8e-63 245.4 472 35.6
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.1e-62 245.0 438 38.4
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.5e-62 244.6 460 36.7
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 5.7e-62 242.7 403 39.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 9.7e-62 241.9 466 36.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 9.7e-62 241.9 469 36.9
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.7e-61 241.1 471 35.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 2.2e-61 240.7 409 39.4
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 2.8e-61 240.4 369 41.7
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.8e-61 240.4 430 37.7
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 2.8e-61 240.4 466 34.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 6.3e-61 239.2 457 37.4
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.1e-60 238.4 402 38.3
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.1e-60 238.4 461 37.5
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 1.4e-60 238.0 402 38.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.4e-60 238.0 402 39.1
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.4e-60 237.3 440 37.3
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.1e-60 236.9 466 35.6
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 5.3e-60 236.1 474 35.7
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.2e-59 235.0 445 39.6
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.6e-59 234.6 474 35.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.5e-59 233.0 456 35.7
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.7e-58 231.1 438 36.1
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.9e-58 230.3 434 35.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.1e-57 228.4 406 38.9
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.1e-57 228.4 434 35.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.1e-57 228.4 401 37.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-57 228.0 434 37.1
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 2.5e-57 227.3 454 34.6
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 3.2e-57 226.9 466 35.4
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.2e-57 226.5 510 34.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 7.2e-57 225.7 411 38.7
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-56 224.9 296 47.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 4.7e-56 223.0 446 35.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.4e-55 221.5 505 33.7
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.8e-55 221.1 353 41.1
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.8e-55 221.1 383 37.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 3.7e-53 213.4 469 33.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-52 211.8 256 48.0
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 4.5e-51 206.5 433 35.1
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 8.5e-50 202.2 413 32.4
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.7e-48 197.2 364 36.5
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.1e-48 196.1 360 37.5
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.0e-46 191.0 421 35.9
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.5e-42 176.0 361 34.9
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.1e-41 175.3 493 32.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 5.5e-41 172.9 177 58.2
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 3.6e-40 170.2 183 55.2
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-39 168.3 263 40.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-38 164.1 267 40.4
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.8e-37 160.6 331 32.3
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.3e-33 146.7 161 54.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.3e-29 135.2 293 35.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.0e-28 129.4 330 32.1
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.6e-27 126.7 150 54.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.0e-27 126.3 115 56.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.0e-26 124.0 309 32.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.5e-25 121.7 239 33.9
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.3e-25 120.2 354 29.1
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 9.5e-25 119.0 173 37.6
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-23 115.5 326 30.1
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-23 115.2 208 38.9
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.8e-23 114.8 136 50.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.3e-23 114.4 203 45.3
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 5.8e-22 109.8 130 49.2
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.3e-21 108.6 232 33.2
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 6.0e-19 99.8 198 42.4
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.7e-18 98.2 93 60.2
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 2.8e-16 90.9 163 39.9
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.8e-16 90.9 117 41.0
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 8.9e-15 85.9 267 29.6
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.5e-14 82.8 115 47.8
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 7.5e-14 82.8 265 29.4
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 9.9e-14 82.4 157 34.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 3.7e-13 80.5 103 45.6
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 3.7e-13 80.5 127 38.6
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 2.4e-12 77.8 58 62.1
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 7.8e-11 72.8 138 33.3
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 2.3e-10 71.2 121 38.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.6e-10 69.7 154 32.5
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.9e-09 68.2 71 47.9
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 2.5e-09 67.8 77 44.2
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 5.6e-09 66.6 64 50.0
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 5.6e-09 66.6 83 39.8
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-08 65.1 62 64.5
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.2e-08 63.2 74 48.6
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.4e-07 62.0 125 40.0
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.8e-07 61.6 85 50.6
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.1e-07 60.8 215 27.4
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 4.0e-07 60.5 56 50.0


User provided reference genes

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