Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.2e-133 479.9 267 100.0
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 6.7e-55 218.4 201 66.2
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.5e-54 217.2 201 64.2
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 1.1e-52 211.1 203 63.1
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.4e-52 209.9 201 66.2
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 5.9e-51 205.3 202 67.3
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 1.1e-49 201.1 203 64.0
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 3.5e-48 196.1 201 66.2
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 4.8e-45 185.7 267 53.6
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 5.3e-44 182.2 276 51.4
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 1.5e-43 180.6 201 59.7
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 1.5e-43 180.6 201 59.7
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 1.5e-43 180.6 201 59.7
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 6.5e-42 175.3 202 59.4
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 6.5e-42 175.3 202 59.4
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 8.5e-42 174.9 164 61.6
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 5.5e-41 172.2 201 57.2
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 9.4e-41 171.4 206 53.9
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 7.9e-40 168.3 201 56.2
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 8.8e-39 164.9 214 57.0
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 1.5e-38 164.1 211 50.7
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 2.0e-38 163.7 202 57.4
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 4.3e-38 162.5 200 60.0
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 7.4e-38 161.8 207 58.9
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 9.7e-38 161.4 201 55.2
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 3.1e-36 156.4 213 57.3
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 4.1e-36 156.0 193 59.1
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 9.1e-36 154.8 207 57.0
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 1.2e-35 154.5 193 58.5
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 1.2e-35 154.5 194 58.2
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 1.3e-34 151.0 193 59.1
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 3.8e-34 149.4 210 57.1
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 1.1e-33 147.9 206 53.9
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 1.6e-32 144.1 193 57.5
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 3.6e-32 142.9 213 53.5
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 7.9e-32 141.7 210 53.8
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 2.0e-30 137.1 170 54.7
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 2.2e-29 133.7 209 54.1
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 5.9e-27 125.6 113 62.8
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 1.0e-26 124.8 206 51.9
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 8.5e-26 121.7 207 51.2
CARHR132130 Cardamine hirsuta HOM05D008508 ORTHO05D003325 4.1e-20 102.8 95 60.0
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 9.1e-20 101.7 206 46.1
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 5.9e-19 99.0 252 37.3
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 7.7e-19 98.6 140 47.1
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 1.1e-17 94.7 206 45.1
THA.LOC104824529 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.9e-17 94.0 118 50.8
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 7.2e-17 92.0 206 44.7
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 2.4e-12 77.0 71 62.0
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.7e-11 73.6 72 54.2
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.5e-11 73.2 72 54.2
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.5e-11 73.2 72 54.2
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.5e-11 73.2 72 54.2
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 4.5e-11 72.8 72 54.2
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 1.3e-10 71.2 100 47.0
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.7e-10 70.9 72 58.3
BcaB01g00255 Brassica carinata HOM05D008508 ORTHO05D003325 2.2e-10 70.5 88 63.6
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.2e-10 70.5 165 38.2
Carub.0004s1940 Capsella rubella HOM05D013670 ORTHO05D016164 2.9e-10 70.1 45 77.8
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 2.9e-10 70.1 247 30.0
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 3.8e-10 69.7 49 69.4
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 3.8e-10 69.7 151 38.4
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 5.0e-10 69.3 147 40.1
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 1.1e-09 68.2 60 58.3
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.1e-09 68.2 76 48.7
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.5e-09 67.8 65 55.4
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.5e-09 67.8 151 36.4
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.9e-09 67.4 48 68.8
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.9e-09 67.4 186 32.3
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.5e-09 67.0 48 62.5
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 3.2e-09 66.6 63 60.3
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 4.2e-09 66.2 115 42.6
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 4.2e-09 66.2 160 34.4
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 9.4e-09 65.1 94 46.8
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 1.2e-08 64.7 152 34.2
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 2.7e-08 63.5 59 54.2
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.7e-08 63.5 70 51.4
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 2.7e-08 63.5 54 61.1
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.7e-08 63.5 131 38.2
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 3.6e-08 63.2 100 43.0
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 3.6e-08 63.2 85 48.2
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 3.6e-08 63.2 151 32.5
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 3.6e-08 63.2 94 43.6
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 4.7e-08 62.8 83 42.2
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 4.7e-08 62.8 256 28.1
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 6.1e-08 62.4 62 53.2
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 8.0e-08 62.0 72 50.0
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.0e-08 62.0 72 51.4
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 8.0e-08 62.0 173 31.8
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.0e-07 61.6 112 36.6
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.0e-07 61.6 66 51.5
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 1.4e-07 61.2 78 50.0
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 1.4e-07 61.2 73 49.3
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.4e-07 61.2 150 31.3
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.8e-07 60.8 106 40.6
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 1.8e-07 60.8 87 42.5
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 2.3e-07 60.5 100 42.0
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 2.3e-07 60.5 76 44.7
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 2.3e-07 60.5 74 52.7
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 2.3e-07 60.5 48 62.5
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.3e-07 60.5 111 39.6
BcaC02g07532 Brassica carinata HOM05D008508 ORTHO05D003325 3.0e-07 60.1 77 50.6
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 3.0e-07 60.1 132 35.6
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.0e-07 60.1 73 47.9
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 4.0e-07 59.7 57 59.6
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.0e-07 59.7 144 34.7
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 4.0e-07 59.7 128 34.4
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.2e-07 59.3 46 60.9
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.2e-07 59.3 142 34.5
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 5.2e-07 59.3 74 47.3
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 6.8e-07 58.9 139 39.6
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 6.8e-07 58.9 108 38.9
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 8.8e-07 58.5 258 27.1
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 8.8e-07 58.5 89 42.7
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.2e-06 58.2 53 54.7
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 1.2e-06 58.2 61 50.8
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.2e-06 58.2 94 37.2
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.5e-06 57.8 122 38.5
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 1.5e-06 57.8 44 61.4
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.5e-06 57.8 73 43.8
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.5e-06 57.8 61 49.2
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.5e-06 57.8 94 37.2
AL5G37360 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.0e-06 57.4 51 68.6
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 2.0e-06 57.4 132 36.4
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.0e-06 57.4 66 47.0
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 2.0e-06 57.4 65 47.7
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 2.6e-06 57.0 84 41.7
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.6e-06 57.0 67 47.8
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 3.4e-06 56.6 114 36.8
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 3.4e-06 56.6 127 35.4
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 3.4e-06 56.6 135 36.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 3.4e-06 56.6 97 41.2
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 4.4e-06 56.2 80 50.0
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 4.4e-06 56.2 73 45.2
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.7e-06 55.8 90 40.0
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 5.7e-06 55.8 94 41.5
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 5.7e-06 55.8 82 45.1
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 5.7e-06 55.8 117 36.8
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 5.7e-06 55.8 80 41.2
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 5.7e-06 55.8 71 49.3
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 5.7e-06 55.8 234 33.3
Carub.0005s2024 Capsella rubella HOM05D013670 ORTHO05D016164 7.5e-06 55.5 33 75.8
Migut.M01027 Erythranthe guttata HOM05D004206 ORTHO05D003325 7.5e-06 55.5 71 43.7
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.5e-06 55.5 67 46.3
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.5e-06 55.5 121 37.2
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 7.5e-06 55.5 58 53.4
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 7.5e-06 55.5 140 33.6
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 9.8e-06 55.1 73 43.8
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 9.8e-06 55.1 70 47.1
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 9.8e-06 55.1 70 47.1
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 9.8e-06 55.1 61 49.2


User provided reference genes

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