Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 2.5e-145 518.8 276 100.0
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.6e-72 276.9 309 57.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.2e-67 260.8 313 55.0
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 6.0e-67 258.5 311 56.9
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.1e-64 250.0 305 57.4
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.7e-64 249.2 312 55.1
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.4e-63 246.5 330 51.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.1e-63 246.1 306 57.5
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.0e-62 243.4 301 55.8
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 5.8e-62 241.9 301 55.5
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 5.8e-62 241.9 300 56.0
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 3.8e-61 239.2 303 55.4
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 6.4e-61 238.4 305 55.4
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.2e-60 235.7 327 49.5
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 4.1e-39 166.0 314 40.1
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 5.9e-38 162.2 294 39.1
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.2e-37 160.2 323 37.8
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.4e-36 157.5 318 39.0
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.2e-36 155.2 317 37.2
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 4.7e-35 152.5 326 39.6
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.3e-34 150.2 308 39.0
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 3.0e-34 149.8 323 37.5
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 3.9e-34 149.4 305 38.7
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 6.7e-34 148.7 285 38.6
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.5e-33 147.5 314 38.2
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 4.4e-33 146.0 321 37.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 5.7e-33 145.6 349 33.2
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.3e-32 144.4 313 38.3
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.1e-31 141.4 281 39.5
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.1e-31 141.4 334 35.9
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.8e-31 140.6 322 38.2
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.4e-31 140.2 313 36.4
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 7.0e-31 138.7 316 35.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.2e-30 137.9 313 36.1
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.0e-30 137.1 295 36.9
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.5e-30 136.3 337 32.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.5e-30 136.3 302 38.4
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.5e-30 136.0 302 38.4
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.0e-29 134.8 319 35.7
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.3e-29 134.4 234 41.5
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.7e-29 134.0 303 38.3
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.8e-29 132.9 313 35.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.8e-29 132.9 312 33.7
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.8e-29 132.9 326 34.4
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.1e-28 131.3 277 42.6
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.4e-28 131.0 331 35.6
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 9.4e-28 128.3 280 42.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.4e-28 128.3 301 33.2
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 9.4e-28 128.3 318 34.9
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.2e-27 127.9 291 35.4
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.2e-27 127.9 291 35.4
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.6e-27 127.5 332 33.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 3.6e-27 126.3 291 34.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.6e-27 126.3 301 32.9
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.7e-27 125.9 308 34.4
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.1e-27 125.6 330 35.5
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 6.1e-27 125.6 301 35.2
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 6.1e-27 125.6 193 43.5
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 6.1e-27 125.6 193 43.5
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.1e-27 125.6 309 36.2
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.4e-26 124.4 324 34.0
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.4e-26 124.4 275 36.7
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.4e-26 124.4 333 33.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 3.0e-26 123.2 320 32.2
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.9e-26 122.9 257 43.6
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-26 122.5 193 43.5
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-26 122.5 193 43.5
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 6.7e-26 122.1 193 43.0
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 6.7e-26 122.1 193 43.0
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 6.7e-26 122.1 193 43.5
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 8.8e-26 121.7 307 35.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.1e-25 121.3 343 32.7
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.0e-25 120.6 331 31.7
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 2.6e-25 120.2 297 34.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 2.6e-25 120.2 312 34.0
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.4e-25 119.4 296 35.8
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.4e-25 119.4 286 40.2
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 9.7e-25 118.2 277 35.0
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.3e-24 117.9 293 32.4
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.7e-24 117.5 277 37.5
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.2e-24 117.1 292 34.9
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 2.8e-24 116.7 332 33.7
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.7e-24 116.3 345 30.7
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 8.2e-24 115.2 278 38.1
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.2e-24 115.2 331 31.1
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 8.2e-24 115.2 299 34.1
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.8e-23 114.0 276 42.0
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.4e-23 113.6 331 32.3
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.1e-23 113.2 331 31.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.1e-23 113.2 331 31.7
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 3.1e-23 113.2 302 34.4
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.1e-23 113.2 320 33.8
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.1e-23 112.8 296 38.9
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 5.3e-23 112.5 275 42.9
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 9.1e-23 111.7 301 35.2
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 9.1e-23 111.7 326 33.1
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.5e-22 109.8 187 41.2
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 4.5e-22 109.4 187 41.2
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.9e-22 109.0 337 30.6
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 5.9e-22 109.0 260 35.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 7.7e-22 108.6 272 34.6
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.0e-21 108.2 296 33.4
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.0e-21 108.2 292 34.6
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-21 107.5 190 41.1
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.2e-21 107.1 270 35.2
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 6.5e-21 105.5 260 34.2
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.5e-20 104.4 306 33.7
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 7.2e-20 102.1 185 40.5
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.2e-19 101.3 281 32.0
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.6e-19 100.9 278 36.7
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.1e-19 100.5 188 38.8
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.7e-19 100.1 199 46.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 4.7e-19 99.4 282 32.6
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.4e-18 97.8 282 32.3
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.4e-18 97.8 285 31.6
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.3e-18 97.1 142 42.3
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 3.0e-18 96.7 207 36.2
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 3.0e-18 96.7 287 31.7
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 4.0e-18 96.3 337 32.0
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 5.2e-18 95.9 265 32.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 5.2e-18 95.9 303 31.4
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 6.7e-18 95.5 286 35.0
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.6e-17 93.6 262 34.0
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 3.3e-17 93.2 280 34.6
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.7e-16 90.9 204 36.3
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 4.8e-16 89.4 183 42.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 8.3e-16 88.6 318 29.2
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 8.3e-16 88.6 282 35.8
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 8.3e-16 88.6 193 37.3
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.1e-15 88.2 279 30.5
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.4e-15 87.8 273 30.8
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 3.1e-15 86.7 267 34.1
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.3e-15 85.9 198 39.4
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.0e-13 81.6 263 31.9
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 5.0e-13 79.3 74 58.1
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 2.5e-12 77.0 260 33.8
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 3.2e-12 76.6 289 28.4
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 5.5e-12 75.9 122 41.8
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 7.2e-12 75.5 72 51.4
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 2.7e-11 73.6 283 29.7
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 4.0e-10 69.7 360 28.3
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.2e-09 68.2 406 29.3
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.2e-09 68.2 68 55.9
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 1.5e-09 67.8 267 31.5
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.6e-09 67.0 175 38.3
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.4e-09 66.6 163 37.4
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.4e-09 66.6 130 34.6
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.7e-06 57.0 88 42.0


User provided reference genes

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