Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G2170 Aethionema arabicum HOM05D007780 ORTHO05D000140 1.6e-106 389.4 195 100.0
Thhalv10028829m.g Eutrema salsugineum HOM05D007780 ORTHO05D000140 2.6e-80 302.4 192 81.8
Sp6g02460 Schrenkiella parvula HOM05D007780 ORTHO05D000140 9.8e-80 300.4 192 79.7
THA.LOC104814049 Tarenaya hassleriana HOM05D007780 ORTHO05D000140 4.1e-78 295.0 191 78.0
BcaC03g16144 Brassica carinata HOM05D007780 ORTHO05D000140 2.7e-77 292.4 196 79.1
Carub.0006s3459 Capsella rubella HOM05D007780 ORTHO05D000140 4.5e-77 291.6 192 78.6
C02p39310 Brassica napus HOM05D007780 ORTHO05D000140 1.0e-76 290.4 196 78.6
BolC2t09942H Brassica oleracea HOM05D007780 ORTHO05D000140 1.0e-76 290.4 196 78.6
BcaB05g23640 Brassica carinata HOM05D007780 ORTHO05D000140 5.0e-76 288.1 197 77.2
A02p24850 Brassica napus HOM05D007780 ORTHO05D000140 8.6e-76 287.3 198 77.8
CARHR250840 Cardamine hirsuta HOM05D007780 ORTHO05D000140 4.2e-75 285.0 193 78.8
AL6G50500 Arabidopsis lyrata HOM05D007780 ORTHO05D000140 4.7e-74 281.6 193 77.2
Gohir.A05G284100 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.0e-68 263.8 190 71.6
Gohir.D05G285000 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.3e-68 263.5 190 71.6
Gorai.009G300000 Gossypium raimondii HOM05D007780 ORTHO05D000140 1.3e-68 263.5 190 71.6
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 5.0e-68 261.5 186 76.3
Atru.chr12.1187 Acer truncatum HOM05D007780 ORTHO05D000140 1.9e-67 259.6 190 70.5
Cpa.g.sc33.159 Carica papaya HOM05D007780 ORTHO05D000140 2.1e-66 256.1 190 70.5
TWI34G0032 Tripterygium wilfordii HOM05D007780 ORTHO05D000140 2.8e-66 255.8 190 68.4
Ciclev10001966m.g Citrus clementina HOM05D007780 ORTHO05D000140 4.7e-66 255.0 190 70.0
Thecc.10G136600 Theobroma cacao HOM05D007780 ORTHO05D000140 1.0e-65 253.8 192 69.3
Duzib114G0835 Durio zibethinus HOM05D007780 ORTHO05D000140 4.0e-65 251.9 190 70.0
Gohir.A10G191100 Gossypium hirsutum HOM05D007780 ORTHO05D000140 5.2e-65 251.5 190 68.9
Duzib106G1157 Durio zibethinus HOM05D007780 ORTHO05D000140 8.9e-65 250.8 190 69.5
Gohir.D10G198800 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.2e-64 250.4 190 68.4
Gorai.011G222700 Gossypium raimondii HOM05D007780 ORTHO05D000140 1.2e-64 250.4 190 68.4
Prupe.3G281200 Prunus persica HOM05D007780 ORTHO05D000140 3.7e-63 245.4 191 67.0
Duzib128G2061 Durio zibethinus HOM05D007780 ORTHO05D000140 4.9e-63 245.0 193 68.4
QL04p022093 Quercus lobata HOM05D007780 ORTHO05D000140 1.4e-62 243.4 190 65.8
Haze_02962 Corylus avellana HOM05D007780 ORTHO05D000140 4.1e-62 241.9 191 67.5
CANSAT56G1284 Cannabis sativa HOM05D007780 ORTHO05D000140 1.6e-61 240.0 191 67.5
CiPaw.13G017800 Carya illinoinensis HOM05D007780 ORTHO05D000140 1.6e-61 240.0 191 66.0
Manes.04G154500 Manihot esculenta HOM05D007780 ORTHO05D000140 1.6e-61 240.0 190 66.8
MD02G1272200 Malus domestica HOM05D007780 ORTHO05D000140 3.5e-61 238.8 190 63.7
MD07G1041200 Malus domestica HOM05D007780 ORTHO05D000140 3.5e-61 238.8 190 65.3
AT4G02550 Arabidopsis thaliana HOM05D007780 ORTHO05D000140 1.0e-60 237.3 191 69.1
Glyma.06G311800 Glycine max HOM05D007780 ORTHO05D000140 5.0e-60 235.0 191 63.4
Lj3g0012757 Lotus japonicus HOM05D007780 ORTHO05D000140 1.9e-59 233.0 189 63.0
ClCG08G008560 Citrullus lanatus HOM05D007780 ORTHO05D000140 2.5e-59 232.6 191 64.4
Eucgr.G03193 Eucalyptus grandis HOM05D007780 ORTHO05D000140 2.5e-59 232.6 190 63.7
Medtr8g041580 Medicago truncatula HOM05D007780 ORTHO05D000140 5.6e-59 231.5 190 62.1
CiPaw.14G011200 Carya illinoinensis HOM05D007780 ORTHO05D000140 9.5e-59 230.7 191 63.4
CsaV3_6G004550 Cucumis sativus L. HOM05D007780 ORTHO05D000140 9.5e-59 230.7 191 63.9
MELO3C019924.2 Cucumis melo HOM05D007780 ORTHO05D000140 1.2e-58 230.3 191 63.9
Manes.11G009500 Manihot esculenta HOM05D007780 ORTHO05D000140 4.7e-58 228.4 190 62.1
CSS0019130 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.4e-57 226.9 193 62.2
Dinv31989 Davidia involucrata HOM05D007780 ORTHO05D000140 3.1e-57 225.7 196 61.7
Potri.003G190900 Populus trichocarpa HOM05D007780 ORTHO05D000140 5.2e-57 224.9 191 62.3
arahy.Tifrunner.gnm1.ann1.EN22MD Arachis hypogaea HOM05D007780 ORTHO05D000140 1.5e-56 223.4 192 61.5
arahy.Tifrunner.gnm1.ann1.23G0UH Arachis hypogaea HOM05D007780 ORTHO05D000140 2.6e-56 222.6 192 61.5
Ca_24043_v3 Cicer arietinum L. HOM05D007780 ORTHO05D000140 4.4e-56 221.9 187 62.6
Sabra03G0140600 Salix brachista HOM05D007780 ORTHO05D000140 9.8e-56 220.7 190 61.6
Rhsim01G0122400 Rhododendron simsii HOM05D007780 ORTHO05D000140 4.9e-55 218.4 193 58.5
Sed0021640 Sechium edule HOM05D007780 ORTHO05D000140 1.9e-54 216.5 191 60.7
Actinidia01695 Actinidia chinensis HOM05D007780 ORTHO05D000140 2.4e-54 216.1 198 58.1
TPR.G16371 Trifolium pratense HOM05D007780 ORTHO05D000140 4.1e-54 215.3 186 61.3
Cfa010974 Carpinus fangiana HOM05D007780 ORTHO05D000140 5.4e-54 214.9 177 65.0
vmacro20851 Vaccinium macrocarpon HOM05D007780 ORTHO05D000140 1.7e-52 209.9 193 57.0
GSVIVG01012454001 Vitis vinifera HOM05D007780 ORTHO05D000140 3.9e-52 208.8 190 59.5
LjContig00430g0006539 Lotus japonicus HOM05D007780 ORTHO05D000140 1.1e-51 207.2 191 58.1
CSS0047260 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 3.3e-51 205.7 191 59.2
Lj9A650T83 Lonicera japonica HOM05D007780 ORTHO05D000140 1.1e-49 200.7 204 56.9
COL.COLO4_02741 Corchorus olitorius HOM05D001221 ORTHO05D009285 3.2e-46 189.1 156 66.0
CAN.G134.88 Capsicum annuum HOM05D007780 ORTHO05D000140 7.8e-45 184.5 195 53.3
Nitab4.5_0004997g0030 Nicotiana tabacum HOM05D007780 ORTHO05D000140 7.8e-45 184.5 194 53.6
Nitab4.5_0018960g0020 Nicotiana tabacum HOM05D007780 ORTHO05D000140 1.3e-44 183.7 195 52.3
Peaxi162Scf00282g00513 Petunia axillaris HOM05D007780 ORTHO05D000140 1.3e-44 183.7 196 52.6
PGSC0003DMG400019436 Solanum tuberosum HOM05D007780 ORTHO05D000140 1.3e-44 183.7 194 52.1
Solyc01g097250.4 Solanum lycopersicum HOM05D007780 ORTHO05D000140 3.3e-43 179.1 194 51.0
Sopen01g040920 Solanum pennellii HOM05D007780 ORTHO05D000140 3.3e-43 179.1 194 51.0
Sed0021287 Sechium edule HOM05D007780 ORTHO05D000140 3.9e-20 102.4 157 41.4
CSS0005722 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000140 4.3e-19 99.0 186 34.4
CSS0001126 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000140 7.4e-19 98.2 197 33.5
CSS0027470 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.6e-18 97.1 183 35.0
CSS0020500 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.2e-16 90.9 186 32.3
CSS0044988 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 2.0e-16 90.1 182 31.9
CSS0048344 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 6.4e-15 85.1 181 32.6
Nn2g14680 Nelumbo nucifera HOM05D000665 ORTHO05D000140 5.5e-14 82.0 184 32.6
Haze_23288 Corylus avellana HOM05D000665 ORTHO05D000140 7.1e-14 81.6 187 31.0
Haze_23291 Corylus avellana HOM05D000665 ORTHO05D000140 7.1e-14 81.6 187 31.0
QL01p016365 Quercus lobata HOM05D000665 ORTHO05D000140 7.9e-13 78.2 189 32.8
RhsimUnG0001400 Rhododendron simsii HOM05D000034 ORTHO05D000037 8.7e-12 74.7 189 32.8
Dinv29316 Davidia involucrata HOM05D000001 ORTHO05D000003 1.5e-11 73.9 186 29.6
Phvul.006G016600 Phaseolus vulgaris HOM05D000665 ORTHO05D000140 7.4e-11 71.6 186 30.1
vmacro12400 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 9.6e-11 71.2 196 31.6
Rhsim02G0250200 Rhododendron simsii HOM05D007780 ORTHO05D000140 1.6e-10 70.5 179 31.3
CSS0032239 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 2.1e-10 70.1 74 44.6
Glyma.07G234900 Glycine max HOM05D000665 ORTHO05D000140 6.2e-10 68.6 186 28.5
Gohir.D05G075500 Gossypium hirsutum HOM05D000665 ORTHO05D000140 1.1e-09 67.8 185 29.7
COL.COLO4_06628 Corchorus olitorius HOM05D000665 ORTHO05D000140 3.1e-09 66.2 191 28.3
Thecc.09G253400 Theobroma cacao HOM05D000665 ORTHO05D000140 4.0e-09 65.9 184 29.9
Rhsim13G0204800 Rhododendron simsii HOM05D000665 ORTHO05D000140 2.0e-08 63.5 194 27.3
Sed0022741 Sechium edule HOM05D000665 ORTHO05D000140 2.6e-08 63.2 184 26.1
QL08p053984 Quercus lobata HOM05D000034 ORTHO05D000037 5.8e-08 62.0 186 28.5
Ca_02662_v3 Cicer arietinum L. HOM05D000665 ORTHO05D000140 7.6e-08 61.6 202 26.7
Lj4C833G3 Lonicera japonica HOM05D000665 ORTHO05D000140 2.2e-07 60.1 190 25.3
TPR.G11842 Trifolium pratense HOM05D000001 ORTHO05D000003 2.2e-07 60.1 203 27.1
Cc01_g06590 Coffea canephora HOM05D000665 ORTHO05D000140 4.9e-07 58.9 184 27.7
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 4.9e-07 58.9 185 27.0
TAR362G0812 Trochodendron aralioides HOM05D024515 ORTHO05D012445 6.5e-07 58.5 185 29.2
Potri.002G206500 Populus trichocarpa HOM05D003487 ORTHO05D000140 8.4e-07 58.2 181 27.1
Medtr3g045460 Medicago truncatula HOM05D000665 ORTHO05D000140 1.4e-06 57.4 208 26.0
MBI05_g15895_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.5e-06 56.6 204 24.5
Psat2g130400 Pisum sativum HOM05D000665 ORTHO05D000140 2.5e-06 56.6 221 25.8
Solyc10g018645.1 Solanum lycopersicum HOM05D003487 ORTHO05D000140 7.1e-06 55.1 187 25.1
Potri.009G022650 Populus trichocarpa HOM05D003487 ORTHO05D000140 9.3e-06 54.7 182 26.4


User provided reference genes

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