Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.7e-126 456.1 237 100.0
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.5e-79 300.1 249 72.3
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 3.5e-79 298.9 248 70.6
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.9e-78 295.8 248 71.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.1e-77 293.9 254 70.1
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 3.6e-76 288.9 253 70.4
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.0e-75 287.3 232 72.4
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 8.8e-75 284.3 252 69.0
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 8.8e-75 284.3 252 69.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.5e-74 283.5 240 70.4
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.8e-72 276.6 253 68.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 2.0e-71 273.1 260 58.8
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 5.9e-71 271.6 250 62.4
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 7.7e-71 271.2 238 66.8
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-57 226.5 261 52.9
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-57 226.5 261 52.9
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.8e-57 226.1 264 53.4
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 3.5e-55 219.2 265 52.8
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.5e-55 218.8 264 51.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.9e-55 218.4 264 52.3
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.9e-55 218.4 264 52.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.7e-55 218.0 264 52.3
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.7e-54 216.9 260 50.4
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 2.9e-54 216.1 264 52.3
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.6e-54 214.5 264 51.9
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-53 214.2 261 51.0
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.5e-53 213.0 270 48.5
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.5e-53 213.0 267 48.3
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.3e-53 212.6 280 48.9
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 4.2e-53 212.2 268 48.9
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 5.5e-53 211.8 271 49.1
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 9.5e-53 211.1 270 48.1
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.2e-52 210.7 264 49.6
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 4.7e-52 208.8 264 48.9
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 6.1e-52 208.4 261 49.8
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.0e-51 207.6 269 46.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.8e-51 206.8 242 50.4
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.8e-51 206.8 272 48.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.0e-51 205.7 259 49.8
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 6.8e-51 204.9 267 46.8
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.8e-51 204.9 261 45.2
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 8.9e-51 204.5 253 47.4
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.2e-50 204.1 262 46.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.2e-50 204.1 262 47.7
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.2e-50 204.1 258 47.7
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.2e-50 204.1 257 47.5
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.5e-50 203.8 259 49.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.5e-50 203.8 250 50.0
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.0e-50 203.4 257 48.6
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 3.4e-50 202.6 264 45.8
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 4.4e-50 202.2 265 48.3
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 9.8e-50 201.1 263 47.1
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.8e-50 201.1 262 46.6
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.7e-49 200.3 272 46.0
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.8e-49 199.5 262 45.4
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.8e-49 199.5 258 48.1
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.7e-49 199.1 261 44.4
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.7e-49 199.1 262 45.4
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 4.9e-49 198.7 256 46.9
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 8.3e-49 198.0 257 47.5
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 8.3e-49 198.0 262 44.7
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-48 196.8 212 52.8
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-48 196.4 212 52.8
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.4e-48 196.4 257 45.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 3.2e-48 196.1 259 47.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.1e-48 195.7 267 46.8
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 5.4e-48 195.3 264 48.1
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 7.0e-48 194.9 260 45.0
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 7.0e-48 194.9 258 46.9
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.6e-47 193.7 268 45.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.7e-47 193.0 260 45.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 4.5e-47 192.2 242 46.7
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 7.8e-47 191.4 229 48.5
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 7.8e-47 191.4 251 44.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 7.8e-47 191.4 256 48.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.0e-46 191.0 246 48.4
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.3e-46 190.7 264 45.8
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 2.9e-46 189.5 264 43.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.9e-46 189.1 269 46.5
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 5.0e-46 188.7 272 43.8
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 5.0e-46 188.7 260 44.2
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.6e-46 188.3 252 45.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 8.6e-46 188.0 238 49.6
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.1e-45 187.6 252 46.0
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.5e-45 187.2 170 58.2
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 7.3e-45 184.9 253 44.7
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.8e-44 183.0 187 58.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 3.6e-44 182.6 257 44.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 4.7e-44 182.2 253 42.7
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 4.7e-44 182.2 254 44.1
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 8.0e-44 181.4 253 45.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.8e-43 180.3 258 43.4
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.8e-43 180.3 245 47.3
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 2.3e-43 179.9 247 47.4
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 3.1e-43 179.5 221 48.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 3.1e-43 179.5 250 44.8
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 6.8e-43 178.3 233 44.6
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 6.8e-43 178.3 262 43.1
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.2e-42 177.6 255 42.7
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-42 176.8 242 47.9
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 7.5e-42 174.9 250 44.4
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.8e-42 174.5 198 50.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.2e-41 173.3 259 44.0
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.9e-41 172.2 257 42.4
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.9e-41 172.2 257 42.4
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.4e-41 171.8 209 50.2
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.3e-41 171.4 240 45.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.1e-40 171.0 244 45.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.1e-40 171.0 252 42.1
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-40 171.0 167 55.1
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.4e-40 170.6 262 42.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 7.0e-40 168.3 267 40.8
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.7e-39 166.4 281 39.5
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 4.6e-39 165.6 213 45.5
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.6e-39 165.6 238 42.9
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.0e-39 165.2 234 43.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.7e-38 163.7 185 47.6
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 8.6e-38 161.4 256 39.5
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.5e-37 160.6 239 42.3
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 4.3e-37 159.1 271 37.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 7.3e-37 158.3 184 49.5
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-36 157.5 178 50.0
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-36 157.5 178 50.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.6e-36 157.1 185 47.0
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.6e-36 156.0 184 47.8
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 6.2e-36 155.2 109 67.9
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.3e-35 153.3 233 41.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 5.2e-35 152.1 265 38.5
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 6.8e-35 151.8 237 40.9
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 8.9e-35 151.4 176 47.7
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.4e-34 149.4 113 63.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 4.4e-34 149.1 242 40.9
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 4.4e-34 149.1 236 41.1
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 5.8e-34 148.7 225 40.9
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 7.5e-34 148.3 221 42.1
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.3e-33 147.5 105 65.7
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-33 147.5 231 42.4
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.3e-33 147.5 243 39.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.9e-32 143.7 243 37.4
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 7.8e-31 138.3 244 36.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.1e-30 135.6 150 47.3
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-29 133.3 183 42.6
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.1e-28 130.2 113 53.1
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.8e-28 129.8 158 45.6
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-24 117.5 113 50.4
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.2e-24 116.3 196 44.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.5e-23 112.8 115 46.1
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.6e-21 104.8 81 64.2
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.2e-16 89.7 131 38.9
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.0e-14 84.7 92 40.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.3e-14 84.3 136 36.0
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.1e-14 82.4 75 53.3
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 5.6e-13 79.0 166 42.8
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 7.3e-13 78.6 189 27.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.4e-11 74.3 240 30.4
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 4.0e-11 72.8 121 30.6
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.2e-10 71.2 148 30.4
C04p67070 Brassica napus HOM05D004732 ORTHO05D005424 2.6e-10 70.1 117 47.0


User provided reference genes

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