Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.9e-91 338.6 172 100.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.4e-83 310.8 168 93.5
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.2e-76 290.0 172 84.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.2e-75 285.8 167 85.6
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 3.7e-75 285.0 172 82.6
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.1e-74 281.6 169 82.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.1e-73 279.3 170 83.5
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.1e-73 279.3 170 83.5
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 3.5e-73 278.5 170 83.5
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 6.0e-73 277.7 173 81.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.0e-73 277.7 172 83.1
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.0e-72 276.9 172 80.8
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 8.6e-72 273.9 173 80.3
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 5.6e-71 271.2 174 79.9
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.7e-70 268.1 173 79.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.3e-69 265.8 166 81.3
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 6.6e-64 247.7 174 74.7
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.9e-63 246.1 169 74.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.9e-63 246.1 169 74.6
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 7.6e-60 234.2 162 74.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.5e-55 219.9 166 67.5
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.3e-54 216.9 173 67.1
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.6e-54 216.5 167 66.5
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.8e-54 214.9 166 66.3
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.1e-53 213.8 165 66.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.4e-53 212.6 166 65.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 3.1e-53 212.2 166 66.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.3e-53 211.5 166 66.3
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 9.0e-53 210.7 166 65.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-52 210.3 166 63.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.2e-52 210.3 166 65.1
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-52 209.9 170 63.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.5e-52 209.9 168 64.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.5e-52 209.9 166 64.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.0e-52 209.5 170 64.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.6e-52 209.1 168 63.7
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 3.4e-52 208.8 167 64.7
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.8e-52 208.0 172 64.0
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.2e-51 206.1 167 64.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.2e-51 206.1 168 64.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 3.8e-51 205.3 166 62.7
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.8e-51 205.3 167 61.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 6.4e-51 204.5 167 61.7
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 6.4e-51 204.5 172 63.4
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 8.4e-51 204.1 168 63.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.1e-50 203.8 172 63.4
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.4e-50 203.4 166 65.1
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.4e-50 202.6 167 62.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.2e-50 201.8 170 60.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.2e-50 201.8 167 62.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 4.2e-50 201.8 173 59.0
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 9.3e-50 200.7 168 62.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 9.3e-50 200.7 168 63.1
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.1e-49 199.5 170 62.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 2.1e-49 199.5 169 63.3
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.1e-49 199.5 168 63.7
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 4.6e-49 198.4 166 64.5
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 6.0e-49 198.0 170 60.6
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 7.9e-49 197.6 166 62.7
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.9e-49 197.6 166 60.8
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.3e-48 196.8 129 74.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.3e-48 196.8 165 60.0
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.8e-48 196.4 165 58.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.3e-48 196.1 167 61.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.3e-48 196.1 168 58.9
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.3e-48 196.1 165 59.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 3.0e-48 195.7 165 61.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 8.7e-48 194.1 132 72.7
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.1e-47 193.7 172 61.0
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 165 59.4
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.5e-47 193.4 165 60.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.3e-47 192.2 165 60.0
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 7.4e-47 191.0 158 62.7
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 9.6e-47 190.7 165 60.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.6e-47 190.7 172 61.0
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.6e-47 190.7 175 61.1
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.3e-46 190.3 165 59.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.3e-46 190.3 175 60.6
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.3e-46 190.3 167 60.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.1e-46 189.5 165 61.2
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.1e-46 189.5 118 78.8
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.1e-46 189.5 165 58.8
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.7e-46 188.7 167 57.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.8e-46 188.3 160 59.4
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-45 187.2 165 58.8
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.4e-45 186.8 166 59.6
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.4e-45 186.8 165 59.4
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.4e-45 186.0 167 60.5
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.0e-45 185.3 168 60.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.0e-45 184.1 166 59.0
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.2e-44 183.7 166 59.0
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.2e-44 183.7 166 59.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-44 183.7 169 56.2
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-44 183.3 169 56.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.6e-44 182.6 168 56.0
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.6e-44 182.6 165 58.8
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 7.6e-44 181.0 165 57.6
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.6e-44 181.0 166 58.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.3e-43 180.3 165 58.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.2e-43 179.5 166 54.8
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.2e-43 179.5 166 56.6
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 2.2e-43 179.5 166 57.8
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.8e-43 178.7 176 55.7
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.9e-43 178.3 164 57.3
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.9e-43 178.3 166 56.0
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.4e-43 177.9 165 56.4
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.9e-42 176.4 129 69.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.9e-42 176.4 165 56.4
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.2e-42 175.3 165 55.8
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.6e-41 173.3 160 59.4
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.7e-41 172.6 154 58.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.7e-41 172.6 159 55.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.3e-40 170.2 160 55.6
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.8e-40 169.9 169 55.0
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.0e-40 169.1 126 68.3
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.9e-40 168.7 175 56.6
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 6.7e-40 167.9 164 54.9
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 7.4e-39 164.5 172 56.4
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.8e-38 162.5 131 63.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.8e-37 159.8 127 64.6
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.4e-37 159.5 129 61.2
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.5e-34 149.4 169 53.3
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.0e-32 144.1 169 46.7
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.0e-32 144.1 133 58.6
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.5e-31 140.2 129 58.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.5e-31 140.2 128 56.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 9.7e-31 137.5 157 50.3
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.0e-29 131.0 166 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.5e-28 130.2 158 43.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.0e-28 129.8 173 45.7
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.9e-28 128.3 166 47.0
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 7.6e-28 127.9 157 45.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.0e-27 127.5 100 60.0
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.0e-27 127.5 166 47.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.9e-27 125.9 165 47.9
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.8e-27 125.6 144 43.8
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.7e-25 119.4 136 42.6
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.0e-24 117.5 148 39.9
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 4.3e-23 112.1 122 42.6
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 2.2e-22 109.8 84 67.9
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 4.1e-21 105.5 133 44.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.1e-21 105.5 90 60.0
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.5e-20 103.6 66 71.2
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 9.7e-15 84.3 63 58.7
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.1e-13 80.9 90 48.9
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.4e-13 79.7 63 52.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.3e-13 78.6 103 39.8
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 4.5e-12 75.5 45 80.0
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.7e-12 74.7 165 36.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.9e-11 72.8 82 47.6
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.4e-10 70.5 90 36.7
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.1e-09 66.6 68 54.4
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.0e-09 64.7 62 61.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-08 63.9 67 58.2
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.0e-08 62.8 63 57.1
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 1.1e-07 60.8 53 45.3
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.1e-07 60.8 41 65.9
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.0e-07 60.1 88 35.2
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.7e-07 58.5 63 41.3


User provided reference genes

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