Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G20110 Aethionema arabicum HOM05D003242 ORTHO05D003593 1.5e-215 752.7 409 100.0
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 4.8e-121 438.7 396 59.8
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 6.5e-118 428.3 396 59.8
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 4.2e-117 425.6 396 59.1
CARHR134360 Cardamine hirsuta HOM05D003242 ORTHO05D003593 4.2e-117 425.6 391 59.1
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 7.2e-117 424.9 396 60.1
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 1.2e-116 424.1 394 59.1
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 1.6e-116 423.7 396 59.1
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 3.6e-116 422.5 396 59.8
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 6.1e-116 421.8 395 59.7
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 8.0e-116 421.4 396 58.6
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 8.0e-116 421.4 394 60.2
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 8.0e-116 421.4 394 60.2
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 1.0e-115 421.0 396 58.6
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 1.4e-115 420.6 396 57.8
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 4.4e-114 415.6 396 59.1
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 3.7e-113 412.5 394 58.1
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 4.5e-111 405.6 394 57.4
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 3.6e-92 342.8 391 50.4
AL938U10010 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 8.6e-86 321.6 255 67.5
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 5.4e-72 275.8 383 43.9
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 2.6e-66 256.9 387 42.6
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 3.4e-66 256.5 389 41.4
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 2.2e-65 253.8 391 41.7
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.1e-64 248.8 375 41.1
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 6.6e-62 242.3 383 41.5
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 1.5e-61 241.1 374 40.6
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 2.4e-59 233.8 373 39.7
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 6.8e-59 232.3 384 39.6
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 1.2e-58 231.5 392 39.8
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 2.0e-58 230.7 394 38.1
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 7.6e-58 228.8 399 38.8
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 1.7e-57 227.6 396 36.9
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 1.7e-57 227.6 382 38.2
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 4.2e-56 223.0 370 40.5
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 2.1e-55 220.7 341 40.8
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 3.5e-55 219.9 379 38.8
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 3.5e-55 219.9 365 39.5
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 3.5e-55 219.9 395 37.2
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.3e-54 218.0 369 37.1
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 5.1e-54 216.1 377 38.7
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 4.3e-53 213.0 369 36.9
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 4.3e-53 213.0 377 37.4
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 7.3e-53 212.2 367 38.7
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 1.8e-51 207.6 338 37.3
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 5.3e-51 206.1 373 36.5
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 2.0e-50 204.1 372 36.0
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 2.0e-50 204.1 372 36.0
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 2.6e-50 203.8 342 36.3
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 4.4e-50 203.0 370 37.6
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 1.2e-47 194.9 339 36.9
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 6.0e-47 192.6 384 33.6
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 7.9e-47 192.2 374 35.3
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 7.9e-47 192.2 374 35.0
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 1.0e-46 191.8 389 35.0
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 3.9e-46 189.9 380 32.6
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 6.6e-46 189.1 368 36.4
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 1.1e-45 188.3 340 35.0
VMungo1383G3113 Vigna mungo HOM05D003242 ORTHO05D003593 1.5e-45 188.0 377 35.5
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 1.9e-45 187.6 380 32.6
MD01G1122000 Malus domestica HOM05D003242 ORTHO05D003593 1.9e-45 187.6 332 35.8
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 7.3e-45 185.7 376 34.3
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 1.3e-44 184.9 282 39.7
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 2.8e-44 183.7 407 31.9
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 4.8e-44 183.0 369 34.7
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.1e-43 181.8 369 35.5
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.8e-43 181.0 369 35.5
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 1.8e-43 181.0 340 33.5
FAN10G1923 Fragaria x ananassa HOM05D003242 ORTHO05D003593 5.8e-42 176.0 337 34.4
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 9.9e-42 175.3 337 36.2
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 1.3e-41 174.9 376 35.6
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 2.2e-41 174.1 389 34.2
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 4.2e-40 169.9 377 31.8
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 4.2e-40 169.9 413 32.4
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.2e-40 169.9 400 31.5
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.7e-39 167.2 354 34.2
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 7.4e-37 159.1 415 31.3
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 1.6e-36 157.9 284 35.2
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 1.8e-35 154.5 378 30.2
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 1.8e-35 154.5 426 29.8
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.4e-35 154.1 413 31.5
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 3.1e-35 153.7 407 33.7
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 3.4e-34 150.2 402 30.8
Psat3g184400 Pisum sativum HOM05D003242 ORTHO05D003593 1.0e-33 148.7 279 34.8
ECA233G4959 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.7e-33 147.9 377 32.6
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.2e-32 143.7 391 28.9
HanXRQChr12g0370641 Helianthus annuus HOM05D003242 ORTHO05D003593 3.2e-32 143.7 378 32.5
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 7.1e-32 142.5 417 30.7
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 9.3e-32 142.1 414 29.2
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 1.6e-31 141.4 386 29.0
Ca_30311_v3 Cicer arietinum L. HOM05D003242 ORTHO05D003593 2.3e-30 137.5 157 51.0
Thecc.10G049000 Theobroma cacao HOM05D003242 ORTHO05D003593 5.1e-30 136.3 336 30.1
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 2.5e-29 134.0 429 28.2
MELO3C034250.2 Cucumis melo HOM05D003242 ORTHO05D003593 1.6e-28 131.3 285 31.2
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.6e-28 131.3 424 28.8
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.6e-28 131.3 412 27.2
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.6e-28 131.3 433 26.6
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.6e-28 131.3 424 28.8
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.6e-28 131.3 412 27.2
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 1.6e-28 131.3 241 35.3
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 3.7e-28 130.2 424 28.8
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 8.2e-28 129.0 378 29.9
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 8.2e-28 129.0 443 26.0
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 8.2e-28 129.0 416 30.5
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 1.1e-27 128.6 419 27.4
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.8e-27 127.9 379 29.3
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 3.1e-27 127.1 253 34.4
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.1e-27 127.1 399 28.6
Gorai.011G253300 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.3e-25 121.7 162 44.4
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.2e-25 120.9 432 26.4
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.2e-25 120.9 432 26.4
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 8.4e-25 119.0 410 28.0
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 1.1e-24 118.6 358 26.0
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 3.2e-24 117.1 400 28.2
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 1.6e-23 114.8 396 29.3
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.1e-23 114.4 353 25.5
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 7.9e-23 112.5 193 35.2
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 1.3e-22 111.7 405 26.7
Lj3A972T46 Lonicera japonica HOM05D003242 ORTHO05D003593 1.8e-22 111.3 395 25.6
COL.COLO4_14873 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.0e-22 110.5 336 25.6
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 6.7e-22 109.4 401 25.2
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 2.5e-21 107.5 399 24.6
Gohir.A05G300966 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.5e-21 107.5 234 33.8
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.5e-21 107.5 345 26.1
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.3e-21 106.7 374 28.3
Duzib128G1376 Durio zibethinus HOM05D003242 ORTHO05D003593 9.7e-21 105.5 409 24.2
Actinidia19757 Actinidia chinensis HOM05D003242 ORTHO05D003593 1.6e-20 104.8 343 25.7
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 2.2e-20 104.4 358 27.7
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 2.8e-20 104.0 396 24.7
Thecc.05G046100 Theobroma cacao HOM05D003242 ORTHO05D003593 4.8e-20 103.2 396 24.2
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 8.2e-20 102.4 397 27.7
Lj2C101G9 Lonicera japonica HOM05D003242 ORTHO05D003593 2.4e-19 100.9 408 22.5
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 4.1e-19 100.1 351 24.5
CiPaw.09G187700 Carya illinoinensis HOM05D003242 ORTHO05D003593 5.3e-19 99.8 189 30.7
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 6.9e-19 99.4 194 37.1
QL07p046683 Quercus lobata HOM05D003242 ORTHO05D003593 9.0e-19 99.0 344 25.0
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 1.2e-18 98.6 404 26.7
COL.COLO4_14872 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.2e-18 98.6 402 24.1
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 2.0e-18 97.8 290 28.6
vmacro08675 Vaccinium macrocarpon HOM05D003242 ORTHO05D003593 2.6e-18 97.4 427 23.2
PGR004G0625 Punica granatum HOM05D003242 ORTHO05D003593 5.9e-18 96.3 389 24.9
Duzib093G1770 Durio zibethinus HOM05D003242 ORTHO05D003593 7.7e-18 95.9 393 23.4
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 1.0e-17 95.5 390 24.1
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.0e-17 95.5 342 23.7
Prupe.6G249000 Prunus persica HOM05D003242 ORTHO05D003593 1.3e-17 95.1 351 24.5
Rhsim04G0153700 Rhododendron simsii HOM05D003242 ORTHO05D003593 2.2e-17 94.4 407 22.1
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 6.5e-17 92.8 195 33.3
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.1e-16 92.0 412 33.0
Cc06_g03080 Coffea canephora HOM05D003242 ORTHO05D003593 1.9e-16 91.3 353 22.4
Dinv35647 Davidia involucrata HOM05D003242 ORTHO05D003593 1.9e-16 91.3 421 24.7
Medtr1g115385 Medicago truncatula HOM05D003242 ORTHO05D003593 7.2e-16 89.4 100 49.0
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 1.2e-15 88.6 408 26.2
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 6.1e-15 86.3 150 36.7
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 6.1e-15 86.3 337 27.0
MSTRG.19110 Avicennia marina HOM05D003242 ORTHO05D003593 7.9e-15 85.9 347 24.2
Gohir.D05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.0e-14 85.5 324 26.9
Gohir.D05G300366 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.3e-14 84.3 213 31.5
Lalb_Chr04g0257911 Lupinus albus HOM05D003242 ORTHO05D003593 3.0e-14 84.0 143 42.0
Thecc.05G046000 Theobroma cacao HOM05D003242 ORTHO05D003593 3.0e-14 84.0 397 23.7
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 2.5e-13 80.9 159 36.5
Atru.chr12.525 Acer truncatum HOM05D003242 ORTHO05D003593 5.7e-13 79.7 107 43.0
BolC4t28235H Brassica oleracea HOM05D003242 ORTHO05D003593 2.8e-12 77.4 80 53.8
Thecc.10G049300 Theobroma cacao HOM05D003242 ORTHO05D003593 3.7e-12 77.0 195 30.8
Actinidia13120 Actinidia chinensis HOM05D003242 ORTHO05D003593 6.3e-12 76.3 137 30.7
COL.COLO4_14939 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.4e-11 75.1 99 40.4
Ciclev10033929m.g Citrus clementina HOM05D003242 ORTHO05D003593 2.4e-11 74.3 307 27.4
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.4e-11 74.3 324 24.4
Rhsim04G0153300 Rhododendron simsii HOM05D003242 ORTHO05D003593 6.9e-11 72.8 329 20.7
Rhsim04G0153600 Rhododendron simsii HOM05D003242 ORTHO05D003593 3.4e-10 70.5 329 21.9
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 7.7e-10 69.3 262 22.5
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 1.7e-09 68.2 150 36.0
Thecc.10G045600 Theobroma cacao HOM05D003242 ORTHO05D003593 2.9e-09 67.4 103 39.8
COL.COLO4_26933 Corchorus olitorius HOM05D003242 ORTHO05D003593 5.0e-09 66.6 297 26.3
Lj3C972G3 Lonicera japonica HOM05D003242 ORTHO05D003593 8.5e-09 65.9 395 22.0
Hma1.2p1_0192F.1_g083590 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 1.1e-08 65.5 113 38.1
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 1.1e-08 65.5 142 31.0
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.2e-07 62.0 47 53.2
PGR004G1133 Punica granatum HOM05D003242 ORTHO05D003593 2.1e-07 61.2 405 22.7
Lj3A972T44 Lonicera japonica HOM05D003242 ORTHO05D003593 4.7e-07 60.1 380 21.6
GSVIVG01016607001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.7e-07 60.1 76 44.7
Hma1.2p1_0111F.1_g053140 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 6.1e-07 59.7 291 21.3
Hma1.2p1_1481F.1_g286056 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 6.1e-07 59.7 291 21.3
Hma1.2p1_0111F.1_g053145 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 8.8e-06 55.8 134 26.1
Hma1.2p1_1481F.1_g286060 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 8.8e-06 55.8 134 26.1
MBI02_g05996_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D008290 8.8e-06 55.8 368 22.0


User provided reference genes

Program Settings