Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 3.2e-26 120.9 58 100.0
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 4.0e-21 104.0 54 85.2
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 4.0e-21 104.0 54 85.2
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 1.5e-20 102.1 54 83.3
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 1.5e-20 102.1 54 83.3
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 1.5e-20 102.1 54 83.3
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 1.7e-19 98.6 54 81.5
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 1.7e-19 98.6 53 81.1
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 3.7e-19 97.4 57 71.9
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 4.9e-19 97.1 51 84.3
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 6.4e-19 96.7 51 84.3
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 6.4e-19 96.7 51 84.3
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 8.3e-19 96.3 54 74.1
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 1.1e-18 95.9 49 87.8
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.1e-18 95.9 57 70.2
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.9e-18 95.1 57 70.2
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 1.0e-16 89.4 53 67.9
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 3.0e-16 87.8 52 67.3
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 5.0e-16 87.0 58 63.8
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 6.6e-16 86.7 46 78.3
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 8.6e-16 86.3 54 70.4
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 1.1e-15 85.9 51 70.6
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 1.5e-15 85.5 46 76.1
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 1.9e-15 85.1 54 64.8
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 4.3e-15 84.0 55 60.0
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 7.3e-15 83.2 51 66.7
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 9.5e-15 82.8 51 70.6
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 1.2e-14 82.4 51 62.7
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 1.6e-14 82.0 51 66.7
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.6e-14 82.0 51 66.7
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 2.1e-14 81.6 45 73.3
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.8e-14 81.3 50 68.0
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 2.8e-14 81.3 51 64.7
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 3.6e-14 80.9 57 63.2
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 3.6e-14 80.9 49 65.3
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 3.6e-14 80.9 51 64.7
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 4.7e-14 80.5 49 67.3
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 4.7e-14 80.5 51 64.7
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 6.2e-14 80.1 52 63.5
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 6.2e-14 80.1 52 63.5
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 6.2e-14 80.1 43 76.7
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 8.1e-14 79.7 51 66.7
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 8.1e-14 79.7 50 64.0
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 8.1e-14 79.7 51 62.7
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 1.1e-13 79.3 45 71.1
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 1.1e-13 79.3 47 70.2
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 2.3e-13 78.2 51 58.8
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 3.1e-13 77.8 55 61.8
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 3.1e-13 77.8 46 67.4
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 5.2e-13 77.0 51 58.8
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 1.2e-12 75.9 46 65.2
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 1.5e-12 75.5 56 57.1
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 2.0e-12 75.1 56 58.9
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 2.6e-12 74.7 42 71.4
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 4.4e-12 73.9 43 69.8
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 4.4e-12 73.9 43 69.8
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 9.8e-12 72.8 41 70.7
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 1.3e-11 72.4 43 69.8
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 1.3e-11 72.4 51 54.9
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 2.2e-11 71.6 38 76.3
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 1.1e-10 69.3 49 65.3
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 3.2e-10 67.8 44 59.1
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 7.1e-10 66.6 45 57.8
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 1.6e-09 65.5 67 47.8
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 5.6e-07 57.0 53 47.2
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 1.2e-06 55.8 48 52.1


User provided reference genes

Program Settings