Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G19780 Aethionema arabicum HOM05D000909 ORTHO05D000928 2.6e-56 221.9 113 100.0
CARHR134720 Cardamine hirsuta HOM05D000909 ORTHO05D000928 5.0e-36 154.5 122 69.7
Carub.0004s2194 Capsella rubella HOM05D000909 ORTHO05D000928 9.5e-35 150.2 133 66.2
AT2G39830 Arabidopsis thaliana HOM05D000909 ORTHO05D000928 1.2e-34 149.8 121 68.6
Thhalv10016501m.g Eutrema salsugineum HOM05D000909 ORTHO05D000928 4.7e-34 147.9 130 65.4
Sp4g22110 Schrenkiella parvula HOM05D000909 ORTHO05D000928 6.1e-34 147.5 133 65.4
AL4G37380 Arabidopsis lyrata HOM05D000909 ORTHO05D000928 8.0e-34 147.1 121 68.6
BcaC02g12115 Brassica carinata HOM05D000909 ORTHO05D000928 1.1e-30 136.7 128 63.3
C04p07670 Brassica napus HOM05D000909 ORTHO05D000928 1.1e-30 136.7 128 63.3
BolC4t22384H Brassica oleracea HOM05D000909 ORTHO05D000928 1.1e-30 136.7 128 63.3
BcaB02g09082 Brassica carinata HOM05D000909 ORTHO05D000928 9.2e-30 133.7 130 62.3
A05p06570 Brassica napus HOM05D000909 ORTHO05D000928 3.5e-29 131.7 129 62.0
A03p22310 Brassica napus HOM05D000909 ORTHO05D000928 1.7e-28 129.4 121 62.8
BraA03t11463Z Brassica rapa HOM05D000909 ORTHO05D000928 1.7e-28 129.4 121 62.8
C03p26420 Brassica napus HOM05D000909 ORTHO05D000928 2.9e-28 128.6 121 62.8
BolC3t15028H Brassica oleracea HOM05D000909 ORTHO05D000928 2.9e-28 128.6 121 62.8
BcaB01g03574 Brassica carinata HOM05D000909 ORTHO05D000928 2.0e-24 115.9 122 59.8
THA.LOC104824297 Tarenaya hassleriana HOM05D000909 ORTHO05D000928 2.0e-24 115.9 134 53.7
BcaC01g05461 Brassica carinata HOM05D000909 ORTHO05D000928 1.8e-22 109.4 94 60.6
THA.LOC104809143 Tarenaya hassleriana HOM05D000909 ORTHO05D000928 1.8e-22 109.4 113 53.1
Actinidia02908 Actinidia chinensis HOM05D000909 ORTHO05D000928 1.2e-18 96.7 113 46.9
Cc02_g07270 Coffea canephora HOM05D000909 ORTHO05D000928 1.8e-17 92.8 106 50.0
Ciclev10031291m.g Citrus clementina HOM05D000909 ORTHO05D000928 3.1e-17 92.0 110 45.5
Dinv16269 Davidia involucrata HOM05D000909 ORTHO05D000928 4.0e-17 91.7 105 50.5
FAN10G4211 Fragaria x ananassa HOM05D000909 ORTHO05D000928 1.2e-16 90.1 104 49.0
GSVIVG01016461001 Vitis vinifera HOM05D000909 ORTHO05D000928 2.0e-16 89.4 106 47.2
Solyc05g052910.4 Solanum lycopersicum HOM05D000909 ORTHO05D000928 3.4e-16 88.6 105 49.5
FAN01G0087 Fragaria x ananassa HOM05D000909 ORTHO05D000928 4.4e-16 88.2 107 47.7
Migut.F00739 Erythranthe guttata HOM05D000909 ORTHO05D000928 5.8e-16 87.8 108 44.4
FvH4_7g23550 Fragaria vesca HOM05D000909 ORTHO05D000928 5.8e-16 87.8 104 48.1
FAN06G3308 Fragaria x ananassa HOM05D000909 ORTHO05D000928 5.8e-16 87.8 104 48.1
FAN03G2938 Fragaria x ananassa HOM05D000909 ORTHO05D000928 7.5e-16 87.4 104 47.1
CAN.G945.10 Capsicum annuum HOM05D000909 ORTHO05D000928 9.8e-16 87.0 102 48.0
Hma1.2p1_0039F.1_g024780 Hydrangea macrophylla HOM05D000909 ORTHO05D000928 1.7e-15 86.3 105 47.6
Lj8C76T15 Lonicera japonica HOM05D000909 ORTHO05D000928 2.2e-15 85.9 105 45.7
Rhsim03G0137200 Rhododendron simsii HOM05D000909 ORTHO05D000928 6.4e-15 84.3 113 44.2
Sc10g0001900 Simmondsia chinensis HOM05D000909 ORTHO05D000928 8.3e-15 84.0 106 45.3
QL08p061772 Quercus lobata HOM05D000909 ORTHO05D000928 1.1e-14 83.6 104 41.3
SGA_v2.0_scaffold2G00992 Striga asiatica HOM05D000909 ORTHO05D000928 1.1e-14 83.6 107 43.9
vmacro07025 Vaccinium macrocarpon HOM05D000909 ORTHO05D000928 1.4e-14 83.2 113 43.4
RcHm_v2.0_Chr1g0368711 Rosa chinensis HOM05D000909 ORTHO05D000928 1.9e-14 82.8 103 44.7
EL10Ac2g04682 Beta vulgaris HOM05D000909 ORTHO05D000928 2.4e-14 82.4 112 41.1
Eucgr.G02993 Eucalyptus grandis HOM05D000909 ORTHO05D000928 3.2e-14 82.0 100 46.0
Nn2g11276 Nelumbo nucifera HOM05D000909 ORTHO05D000928 3.2e-14 82.0 105 44.8
Phvul.001G237100 Phaseolus vulgaris HOM05D000909 ORTHO05D000928 3.2e-14 82.0 110 41.8
Haze_17134 Corylus avellana HOM05D000909 ORTHO05D000928 5.4e-14 81.3 101 45.5
Sabra10G0151900 Salix brachista HOM05D000909 ORTHO05D000928 5.4e-14 81.3 107 43.9
Atru.chr12.291 Acer truncatum HOM05D000909 ORTHO05D000928 9.2e-14 80.5 109 44.0
Atru.chr12.331 Acer truncatum HOM05D000909 ORTHO05D000928 9.2e-14 80.5 109 44.0
Dinv34463 Davidia involucrata HOM05D000909 ORTHO05D000928 1.6e-13 79.7 105 44.8
ECA233G5023 Erigeron canadensis HOM05D000909 ORTHO05D000928 1.6e-13 79.7 104 45.2
Lsat_1_v5_gn_8_14561 Lactuca sativa HOM05D000909 ORTHO05D000928 1.6e-13 79.7 107 43.9
Duzib114G0021 Durio zibethinus HOM05D000909 ORTHO05D000928 3.5e-13 78.6 110 41.8
Gohir.D10G237200 Gossypium hirsutum HOM05D000909 ORTHO05D000928 3.5e-13 78.6 104 40.4
Gorai.011G270900 Gossypium raimondii HOM05D000909 ORTHO05D000928 3.5e-13 78.6 104 40.4
Manes.10G022200 Manihot esculenta HOM05D000909 ORTHO05D000928 4.6e-13 78.2 110 44.5
Hund16047 Selenicereus undatus HOM05D000909 ORTHO05D000928 6.0e-13 77.8 107 41.1
Sopen03g027220 Solanum pennellii HOM05D000909 ORTHO05D000928 6.0e-13 77.8 105 39.0
Cfa001412 Carpinus fangiana HOM05D000909 ORTHO05D000928 7.8e-13 77.4 101 43.6
Peaxi162Scf00611g00326 Petunia axillaris HOM05D000909 ORTHO05D000928 1.0e-12 77.0 111 40.5
arahy.Tifrunner.gnm1.ann1.79Y86V Arachis hypogaea HOM05D000909 ORTHO05D000928 1.3e-12 76.6 110 40.0
arahy.Tifrunner.gnm1.ann1.J72S78 Arachis hypogaea HOM05D000909 ORTHO05D000928 1.3e-12 76.6 110 40.0
COL.COLO4_25534 Corchorus olitorius HOM05D000909 ORTHO05D000928 2.3e-12 75.9 109 40.4
Glyma.11G223800 Glycine max HOM05D000909 ORTHO05D000928 3.0e-12 75.5 101 40.6
Nitab4.5_0004474g0040 Nicotiana tabacum HOM05D000909 ORTHO05D000928 3.0e-12 75.5 125 38.4
AUR62022790 Chenopodium quinoa HOM05D000909 ORTHO05D000928 3.9e-12 75.1 116 37.9
Ah.10g037150 Amaranthus hybridus HOM05D000909 ORTHO05D000928 5.0e-12 74.7 112 42.0
FAN06G1263 Fragaria x ananassa HOM05D000909 ORTHO05D000928 6.6e-12 74.3 86 48.8
HanXRQChr14g0458391 Helianthus annuus HOM05D000909 ORTHO05D000928 6.6e-12 74.3 87 47.1
PGSC0003DMG400021700 Solanum tuberosum HOM05D000909 ORTHO05D000928 6.6e-12 74.3 75 48.0
Manes.07G121900 Manihot esculenta HOM05D000909 ORTHO05D000928 1.1e-11 73.6 109 44.0
MD01G1141300 Malus domestica HOM05D000909 ORTHO05D000928 1.5e-11 73.2 103 42.7
Glyma.18G034100 Glycine max HOM05D000909 ORTHO05D000928 1.9e-11 72.8 101 39.6
Lalb_Chr20g0116781 Lupinus albus HOM05D000909 ORTHO05D000928 1.9e-11 72.8 99 41.4
Solyc03g079910.3 Solanum lycopersicum HOM05D000909 ORTHO05D000928 1.9e-11 72.8 75 46.7
Hma1.2p1_0026F.1_g016560 Hydrangea macrophylla HOM05D000909 ORTHO05D000928 2.5e-11 72.4 79 49.4
Peaxi162Scf00164g01524 Petunia axillaris HOM05D000909 ORTHO05D000928 2.5e-11 72.4 70 52.9
SalBow6G1462 Salvia bowleyana HOM05D000909 ORTHO05D000928 2.5e-11 72.4 107 41.1
SalBow6G1784 Salvia bowleyana HOM05D000909 ORTHO05D000928 2.5e-11 72.4 107 41.1
MD07G1205400 Malus domestica HOM05D000909 ORTHO05D000928 3.3e-11 72.0 105 39.0
TAR623G0098 Trochodendron aralioides HOM05D000909 ORTHO05D000928 3.3e-11 72.0 105 43.8
Cpa.g.sc19.261 Carica papaya HOM05D000909 ORTHO05D000928 4.3e-11 71.6 71 53.5
TPR.G33729 Trifolium pratense HOM05D000909 ORTHO05D000928 4.3e-11 71.6 101 40.6
CiPaw.02G187700 Carya illinoinensis HOM05D000909 ORTHO05D000928 5.6e-11 71.2 87 43.7
PGR142G2972 Punica granatum HOM05D000909 ORTHO05D000928 7.3e-11 70.9 100 40.0
CAN.G233.2 Capsicum annuum HOM05D000909 ORTHO05D000928 9.5e-11 70.5 104 39.4
ClCG07G003660 Citrullus lanatus HOM05D000909 ORTHO05D000928 1.2e-10 70.1 105 41.0
Nitab4.5_0000779g0080 Nicotiana tabacum HOM05D000909 ORTHO05D000928 1.6e-10 69.7 79 50.6
Psat5g125160 Pisum sativum HOM05D000909 ORTHO05D000928 1.6e-10 69.7 101 39.6
Glyma.02G251800 Glycine max HOM05D000909 ORTHO05D000928 2.1e-10 69.3 105 39.0
TPR.G25849 Trifolium pratense HOM05D000909 ORTHO05D000928 4.7e-10 68.2 102 37.3
LjContig00141g0023214 Lotus japonicus HOM05D000909 ORTHO05D000928 6.2e-10 67.8 103 36.9
Sopen05g031420 Solanum pennellii HOM05D000909 ORTHO05D000928 6.2e-10 67.8 67 52.2
HanXRQChr07g0201771 Helianthus annuus HOM05D000909 ORTHO05D000928 8.1e-10 67.4 92 41.3
Medtr5g081160 Medicago truncatula HOM05D000909 ORTHO05D000928 8.1e-10 67.4 103 38.8
DCAR_011749 Daucus carota HOM05D000909 ORTHO05D000928 1.1e-09 67.0 68 50.0
VMungo0647G2309 Vigna mungo HOM05D000909 ORTHO05D000928 1.1e-09 67.0 105 38.1
Sed0023717 Sechium edule HOM05D000909 ORTHO05D000928 1.4e-09 66.6 107 42.1
Phvul.008G229800 Phaseolus vulgaris HOM05D000909 ORTHO05D000928 1.8e-09 66.2 102 38.2
TWI63G1741 Tripterygium wilfordii HOM05D000909 ORTHO05D000928 2.3e-09 65.9 101 39.6
CSS0042922 Camellia sinensis var. sinensis HOM05D000909 ORTHO05D000928 3.1e-09 65.5 105 38.1
Glyma.14G065000 Glycine max HOM05D000909 ORTHO05D000928 3.1e-09 65.5 102 37.3
Medtr3g069410 Medicago truncatula HOM05D000909 ORTHO05D000928 3.1e-09 65.5 101 37.6
Nn2g13515 Nelumbo nucifera HOM05D000909 ORTHO05D000928 4.0e-09 65.1 106 37.7
CsaV3_5G008440 Cucumis sativus L. HOM05D000909 ORTHO05D000928 8.9e-09 63.9 113 36.3
CiPaw.01G292600 Carya illinoinensis HOM05D000909 ORTHO05D000928 1.2e-08 63.5 104 36.5
Prupe.2G241500 Prunus persica HOM05D000909 ORTHO05D000928 1.2e-08 63.5 104 37.5
ECA238G0405 Erigeron canadensis HOM05D000909 ORTHO05D000928 2.0e-08 62.8 72 47.2
TAR633G0166 Trochodendron aralioides HOM05D000909 ORTHO05D000928 2.0e-08 62.8 102 38.2
Nitab4.5_0006848g0010 Nicotiana tabacum HOM05D000909 ORTHO05D000928 2.6e-08 62.4 88 43.2
HPP92_019226 Vanilla planifolia HOM05D000909 ORTHO05D000928 2.6e-08 62.4 104 37.5
CSS0046606 Camellia sinensis var. sinensis HOM05D000909 ORTHO05D000928 4.4e-08 61.6 84 44.0
HanXRQChr08g0221271 Helianthus annuus HOM05D000909 ORTHO05D000928 4.4e-08 61.6 83 43.4
Lalb_Chr17g0346431 Lupinus albus HOM05D000909 ORTHO05D000928 5.8e-08 61.2 100 38.0
AUR62012151 Chenopodium quinoa HOM05D000909 ORTHO05D000928 9.9e-08 60.5 99 36.4
MBI05_g02657_MAGBIO Magnolia biondii HOM05D000909 ORTHO05D000928 6.4e-07 57.8 77 37.7
Thecc.10G032800 Theobroma cacao HOM05D000909 ORTHO05D000928 6.4e-07 57.8 110 32.7
VMungo1383G1092 Vigna mungo HOM05D000909 ORTHO05D000928 6.4e-07 57.8 101 34.7
unitig_22.g6676 Utricularia gibba HOM05D000909 ORTHO05D000928 8.3e-07 57.4 108 36.1
Aqoxy1G00811 Aquilegia oxysepala HOM05D000909 ORTHO05D000928 1.1e-06 57.0 104 37.5
Lalb_Chr10g0104811 Lupinus albus HOM05D000909 ORTHO05D000928 1.1e-06 57.0 113 36.3
PSO339G2072 Papaver somniferum HOM05D000909 ORTHO05D000928 3.2e-06 55.5 109 37.6
MSTRG.27361 Avicennia marina HOM05D000909 ORTHO05D000928 4.1e-06 55.1 71 43.7
Ca_05850_v3 Cicer arietinum L. HOM05D000909 ORTHO05D000928 5.4e-06 54.7 69 37.7
Ca_17125_v3 Cicer arietinum L. HOM05D000909 ORTHO05D000928 7.1e-06 54.3 85 37.6


User provided reference genes

Program Settings