Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 0.0e+00 1234.2 665 100.0
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 9.3e-215 750.7 684 68.1
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 6.7e-205 718.0 684 67.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 4.8e-203 711.8 686 65.3
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 5.9e-201 704.9 687 65.5
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 4.2e-199 698.7 693 62.9
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 3.6e-190 669.1 622 68.3
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 2.8e-179 632.9 682 61.0
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 2.8e-179 632.9 682 61.0
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.0e-176 624.4 683 61.8
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 3.5e-161 572.8 652 54.1
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.5e-159 566.6 599 55.3
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.2e-156 557.8 663 52.3
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.5e-151 540.8 667 50.4
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.9e-151 540.4 649 52.4
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.6e-151 538.9 654 51.2
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.6e-150 537.3 667 50.4
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.6e-150 537.3 654 51.1
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.3e-149 533.5 652 50.9
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.4e-148 529.3 652 50.9
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.3e-147 527.7 515 65.6
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.0e-144 518.1 650 50.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.7e-144 517.3 650 50.3
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.7e-144 517.3 654 49.5
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 5.6e-143 512.3 649 48.7
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 7.3e-143 511.9 653 50.1
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.5e-140 504.2 691 48.6
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 3.7e-139 499.6 652 50.0
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 8.3e-139 498.4 645 49.5
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.4e-138 497.7 590 50.0
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.7e-137 493.4 652 49.1
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.7e-137 493.4 652 49.1
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.9e-136 489.6 662 47.9
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 3.9e-136 489.6 652 50.3
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 5.1e-136 489.2 685 48.9
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.1e-135 488.0 648 50.3
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.6e-135 485.7 648 49.8
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 7.3e-135 485.3 624 49.2
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 1.6e-134 484.2 651 48.8
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.1e-134 483.8 660 48.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.8e-134 483.4 649 50.1
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.7e-134 482.6 698 48.1
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.1e-133 481.5 648 50.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.8e-133 480.7 646 48.0
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.8e-133 480.7 648 46.0
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 2.3e-133 480.3 646 49.1
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 6.8e-133 478.8 676 46.9
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.2e-132 478.0 702 47.4
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 4.4e-132 476.1 652 50.5
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.3e-131 474.6 591 50.1
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.3e-131 474.6 657 47.2
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.2e-131 473.8 697 45.9
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 4.9e-131 472.6 638 47.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 2.4e-130 470.3 655 45.6
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.4e-130 469.2 709 45.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 2.1e-129 467.2 641 48.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 7.8e-129 465.3 675 44.9
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 7.8e-129 465.3 658 47.3
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 5.1e-128 462.6 662 45.5
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 6.6e-128 462.2 643 46.2
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 6.6e-128 462.2 673 45.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 2.5e-127 460.3 680 45.3
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 9.6e-127 458.4 697 45.1
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.2e-126 458.0 667 45.3
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.5e-124 451.1 712 44.4
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 7.6e-124 448.7 636 46.2
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 9.9e-124 448.4 652 44.5
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.2e-123 447.2 644 45.8
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.2e-123 447.2 596 47.7
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 3.8e-123 446.4 708 44.2
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 4.9e-123 446.0 596 47.3
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 8.4e-123 445.3 707 44.0
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.4e-122 443.7 667 46.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 3.2e-122 443.4 594 47.3
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 7.1e-122 442.2 656 44.7
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.2e-121 441.4 615 46.3
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.2e-121 441.4 700 42.7
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.6e-121 441.0 683 44.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.6e-121 441.0 668 44.5
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 3.5e-121 439.9 685 43.6
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.7e-120 435.3 596 46.1
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 4.4e-116 422.9 642 44.9
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 2.4e-114 417.2 690 42.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.2e-113 414.8 682 42.4
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 6.0e-113 412.5 643 43.5
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 7.8e-113 412.1 688 41.6
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.0e-112 411.8 638 43.9
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 6.6e-112 409.1 657 42.9
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 3.3e-111 406.8 801 38.3
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 9.0e-109 398.7 513 49.1
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.0e-109 398.7 632 43.0
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 2.0e-108 397.5 578 46.0
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 9.3e-106 388.7 651 40.9
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 1.0e-104 385.2 621 43.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.0e-104 383.6 684 39.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 1.1e-103 381.7 539 48.2
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 7.6e-100 369.0 697 39.9
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 5.5e-98 362.8 620 42.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.8e-96 357.8 695 39.0
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 8.2e-94 349.0 638 39.5
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 3.1e-93 347.1 614 41.7
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.5e-92 344.7 513 43.3
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 2.5e-90 337.4 666 38.3
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 8.7e-88 328.9 586 41.6
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 2.3e-80 304.3 700 35.6
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 3.0e-80 303.9 605 38.7
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 7.4e-79 299.3 504 41.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.8e-78 297.4 628 39.8
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.2e-76 292.0 472 43.0
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.0e-75 288.9 274 55.8
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.0e-72 277.3 477 40.3
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 2.0e-71 274.6 497 40.6
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 7.7e-68 262.7 189 67.7
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 2.1e-65 254.6 458 41.9
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.0e-64 252.3 240 67.1
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.7e-59 235.0 270 48.9
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 6.5e-59 233.0 207 54.1
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.8e-56 224.9 593 35.9
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 8.0e-49 199.5 540 35.0
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 6.8e-48 196.4 197 50.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 8.8e-48 196.1 216 46.8
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 1.1e-42 179.1 169 64.5
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 4.7e-41 173.7 173 59.0
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.2e-38 164.9 427 31.9
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 7.8e-36 156.4 411 30.7
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 5.0e-35 153.7 156 55.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.1e-32 144.4 423 31.9
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 8.9e-32 142.9 217 45.2
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 9.8e-31 139.4 121 57.9
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 3.7e-30 137.5 137 51.8
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 7.8e-28 129.8 172 45.3
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.9e-26 125.2 128 54.7
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 2.2e-22 111.7 139 51.8
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 3.7e-22 110.9 101 61.4
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 3.2e-21 107.8 114 49.1
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.4e-21 107.1 105 61.0
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 5.6e-18 97.1 86 62.8
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.2e-15 89.4 392 28.1
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 3.7e-14 84.3 73 54.8
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 6.0e-12 77.0 49 73.5
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.0e-11 76.3 59 64.4
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.5e-10 72.4 112 47.3
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 9.6e-10 69.7 132 38.6
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.1e-09 68.6 72 47.2
BcaB01g03581 Brassica carinata HOM05D004806 ORTHO05D005397 6.2e-09 67.0 91 50.5
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.8e-07 60.5 48 62.5
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 5.8e-07 60.5 87 34.5
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 7.6e-07 60.1 44 61.4
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 2.2e-06 58.5 42 57.1


User provided reference genes

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