Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.5e-250 869.0 435 100.0
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.0e-214 748.4 435 85.3
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 5.3e-211 737.6 436 85.3
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-210 736.5 437 84.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.5e-210 734.6 439 83.1
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.9e-210 734.2 437 84.4
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.7e-210 733.8 442 84.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-194 681.0 435 77.7
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 7.7e-194 680.6 435 77.0
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 6.6e-193 677.6 436 76.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 8.6e-193 677.2 437 77.1
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-192 676.0 435 75.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-191 673.3 435 76.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-191 672.9 437 76.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.6e-191 672.9 435 76.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 6.1e-191 671.0 437 76.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 5.2e-190 667.9 437 76.4
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 5.2e-190 667.9 437 76.4
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 9.8e-189 663.7 437 76.2
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-185 652.5 436 75.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-185 652.5 436 75.0
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 3.3e-184 648.7 439 75.4
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.0e-182 643.7 437 74.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 5.2e-182 641.3 436 73.4
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 6.8e-182 641.0 436 73.4
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.7e-180 635.2 441 73.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 9.2e-179 630.6 436 72.7
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.6e-176 621.3 438 71.7
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.6e-173 612.5 437 72.5
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.9e-172 609.0 440 70.9
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.4e-172 607.8 437 72.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.6e-170 603.2 436 71.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-169 599.4 436 71.1
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-169 597.8 436 70.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.6e-169 597.8 436 70.9
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-168 596.3 436 70.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.7e-167 591.7 417 72.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.3e-153 546.2 467 60.0
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.1e-150 535.8 468 59.8
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 5.8e-149 531.6 466 59.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 4.2e-147 525.4 463 59.0
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 5.4e-147 525.0 435 60.2
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-146 523.9 458 60.3
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.1e-146 523.1 463 58.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.6e-146 521.9 458 60.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.6e-146 521.9 470 58.3
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 7.8e-146 521.2 467 57.6
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.3e-145 520.4 466 59.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.3e-145 520.4 441 59.4
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.0e-145 519.2 465 58.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.0e-145 519.2 458 59.8
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 5.1e-145 518.5 468 59.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.9e-144 516.5 466 58.8
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.3e-144 515.4 468 57.1
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.6e-144 515.0 465 58.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.3e-144 514.6 466 58.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.6e-144 514.2 467 57.4
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.3e-143 513.8 467 56.7
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.3e-143 513.8 466 58.6
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-143 513.1 465 58.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.8e-143 512.7 465 58.9
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.6e-143 512.3 467 56.3
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.6e-143 512.3 473 55.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 3.6e-143 512.3 466 55.6
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 3.1e-142 509.2 473 56.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-142 508.8 465 58.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 6.9e-142 508.1 469 57.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.5e-141 506.9 465 58.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.5e-141 506.9 465 58.5
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.4e-141 505.8 458 57.4
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.4e-141 505.8 466 56.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.9e-140 502.7 467 56.1
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.4e-140 501.1 466 56.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.1e-139 500.7 473 56.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.3e-137 493.8 463 54.2
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.8e-137 493.4 458 55.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 5.1e-137 491.9 467 55.5
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 8.7e-137 491.1 469 55.2
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.1e-136 490.7 472 55.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.1e-136 490.7 448 57.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.3e-136 488.8 458 55.2
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.6e-136 488.4 467 55.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 7.4e-136 488.0 448 54.7
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 7.4e-136 488.0 468 56.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.3e-135 487.3 465 55.1
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 2.8e-135 486.1 465 56.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.5e-133 480.3 468 54.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.0e-133 479.9 447 55.7
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 5.8e-133 478.4 477 54.7
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 7.6e-133 478.0 473 53.5
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.7e-132 476.9 451 54.3
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.7e-132 476.9 470 53.8
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.8e-132 475.7 453 54.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.4e-132 474.9 453 54.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 6.4e-132 474.9 474 54.4
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 8.4e-132 474.6 454 53.1
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 4.2e-131 472.2 436 59.6
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.2e-130 470.7 468 55.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.5e-130 469.2 455 55.6
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 3.5e-130 469.2 459 53.8
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 4.6e-130 468.8 453 53.0
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 4.6e-130 468.8 450 52.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.0e-129 467.6 472 53.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.0e-129 466.1 446 52.7
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.1e-129 465.3 463 53.1
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-128 464.2 471 52.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.7e-128 461.8 449 53.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 7.4e-128 461.5 466 52.1
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 9.6e-128 461.1 472 52.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.3e-127 460.7 447 54.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.1e-127 459.9 468 51.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.8e-127 459.5 461 53.6
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.2e-127 458.4 453 53.0
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.4e-126 457.2 464 52.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.8e-126 456.8 448 52.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.1e-126 456.1 447 53.7
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 9.0e-126 454.5 466 52.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.2e-125 454.1 446 51.3
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.8e-124 449.1 453 50.8
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.5e-124 448.4 444 52.0
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 6.5e-124 448.4 455 50.5
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 4.2e-123 445.7 467 51.8
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.2e-123 445.7 466 52.1
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.5e-123 445.3 455 51.4
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 7.1e-123 444.9 443 51.7
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.1e-123 444.9 465 51.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.0e-121 441.0 446 50.0
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-121 440.3 324 69.8
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 5.7e-120 435.3 457 51.2
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.4e-120 434.9 467 50.5
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 7.4e-120 434.9 434 49.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 9.7e-120 434.5 450 50.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 9.7e-120 434.5 465 50.1
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.8e-119 433.0 465 50.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 3.7e-119 432.6 471 51.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.8e-119 432.2 462 50.4
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.4e-117 426.0 446 51.3
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-112 409.5 440 50.2
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.9e-109 398.7 468 45.5
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.5e-108 395.2 401 51.6
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.1e-104 384.4 380 53.4
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.6e-101 373.2 439 47.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 8.0e-98 361.7 432 46.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.1e-96 357.8 421 46.3
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 7.4e-96 355.1 290 61.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 7.4e-96 355.1 290 61.0
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.6e-93 347.4 456 43.6
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 8.5e-92 341.7 414 44.4
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.5e-91 340.9 427 43.8
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.4e-86 322.4 430 41.9
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-85 321.2 424 43.2
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-85 320.5 431 42.2
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.5e-85 319.3 478 38.5
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-79 301.2 202 74.3
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-79 300.8 202 74.3
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.2e-75 286.2 419 39.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 5.6e-67 259.2 164 79.3
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.9e-57 225.3 212 54.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.4e-56 223.0 331 38.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.4e-54 218.0 337 41.8
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.1e-49 200.3 202 53.5
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-46 191.0 283 45.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.1e-45 187.6 212 47.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.5e-43 180.6 200 48.5
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.4e-30 138.3 123 63.4
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.4e-30 137.5 128 53.1
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 3.6e-26 123.6 88 72.7
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.3e-25 119.8 330 29.4
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.0e-24 117.9 90 71.1
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 2.9e-15 87.4 99 48.5
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 1.2e-13 82.0 64 73.4
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-11 74.7 47 78.7
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.9e-07 60.8 135 32.6


User provided reference genes

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