Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.4e-56 222.6 104 100.0
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.3e-50 201.1 103 90.3
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 3.6e-49 198.0 103 89.3
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.1e-48 196.4 103 88.3
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.8e-48 195.7 103 87.4
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.8e-48 195.7 103 87.4
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.1e-48 194.9 103 87.4
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 6.9e-48 193.7 103 88.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.2e-47 193.0 100 90.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.6e-47 191.8 102 88.2
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 4.4e-47 191.0 103 87.4
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 5.8e-47 190.7 103 85.4
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.3e-46 189.5 103 85.4
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.7e-46 189.1 103 87.4
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.8e-46 188.0 101 88.1
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.8e-46 188.0 102 87.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.2e-44 183.0 103 80.6
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 4.3e-42 174.5 103 77.7
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 9.6e-42 173.3 103 77.7
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 2.1e-41 172.2 103 77.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.1e-41 172.2 103 77.7
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-41 171.0 103 75.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-41 171.0 103 75.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 4.8e-41 171.0 103 75.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 4.8e-41 171.0 103 76.7
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.1e-40 169.9 103 73.8
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 4.0e-40 167.9 88 88.6
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.9e-40 167.2 104 73.1
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 9.0e-40 166.8 103 77.7
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.5e-39 166.0 100 74.0
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.5e-39 166.0 103 71.8
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.5e-39 166.0 104 73.1
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.0e-39 165.6 103 72.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.4e-39 164.9 103 75.7
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 7.6e-39 163.7 103 71.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.3e-38 162.9 103 72.8
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.7e-38 162.5 103 70.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.7e-38 162.5 103 72.8
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.2e-38 162.2 103 70.9
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 4.9e-38 161.0 103 70.9
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 4.9e-38 161.0 103 70.9
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.4e-38 160.6 103 72.8
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 8.4e-38 160.2 104 71.2
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 8.4e-38 160.2 104 72.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.1e-37 159.8 103 70.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.4e-37 159.5 109 68.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.4e-37 158.7 103 70.9
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.2e-37 158.3 104 69.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 3.2e-37 158.3 104 71.2
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.1e-37 157.1 104 72.1
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 7.1e-37 157.1 101 70.3
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.2e-36 156.4 104 67.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.2e-36 156.4 103 69.9
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.7e-36 155.2 103 68.9
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.7e-36 155.2 103 66.0
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.7e-36 155.2 103 66.0
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 3.5e-36 154.8 103 68.9
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 3.5e-36 154.8 103 68.0
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.9e-36 153.7 104 70.2
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 7.9e-36 153.7 104 70.2
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.0e-35 153.3 103 67.0
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.0e-35 153.3 103 68.9
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.3e-35 152.9 103 67.0
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.8e-35 152.5 103 65.0
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 2.3e-35 152.1 103 68.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.0e-35 151.8 83 81.9
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 5.1e-35 151.0 104 66.3
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.1e-34 149.8 105 68.6
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.5e-34 149.4 103 67.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-34 149.1 103 67.0
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 2.5e-34 148.7 87 75.9
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.3e-34 147.9 103 67.0
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.6e-34 147.5 105 68.6
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 9.6e-34 146.7 103 66.0
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.6e-34 146.7 103 66.0
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.6e-33 146.0 101 64.4
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.6e-33 146.0 103 66.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.1e-33 145.6 103 66.0
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.7e-33 144.8 105 69.5
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.8e-33 144.4 103 66.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 4.8e-33 144.4 104 64.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.8e-32 142.5 104 65.4
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.4e-32 142.1 104 66.3
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 3.1e-32 141.7 104 66.3
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 5.3e-32 141.0 101 67.3
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 6.9e-32 140.6 104 65.4
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.5e-31 139.4 101 68.3
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 7.6e-31 137.1 106 66.0
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.0e-30 136.7 104 61.5
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.0e-30 136.7 86 70.9
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.2e-30 135.6 104 59.6
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.9e-30 135.2 106 63.2
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.4e-29 132.9 82 76.8
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.4e-29 132.9 104 59.6
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 3.2e-29 131.7 100 63.0
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 4.2e-29 131.3 103 61.2
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 4.2e-29 131.3 103 62.1
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 9.3e-29 130.2 103 60.2
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.2e-28 129.8 106 62.3
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.7e-28 128.6 103 59.2
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.5e-28 128.3 103 61.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 6.0e-28 127.5 106 62.3
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.0e-27 126.7 104 61.5
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 5.1e-27 124.4 71 81.7
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.1e-27 124.4 103 61.2
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.9e-26 122.5 73 78.1
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.9e-26 122.5 106 59.4
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.9e-26 122.5 106 61.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.5e-26 122.1 103 55.3
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 2.5e-26 122.1 106 61.3
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.3e-26 121.7 106 61.3
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.3e-26 121.7 106 61.3
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 4.3e-26 121.3 103 62.1
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.3e-25 119.8 106 61.3
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.3e-25 119.8 103 55.3
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.2e-25 117.1 103 56.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.1e-24 116.7 105 55.2
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.4e-24 116.3 104 54.8
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.8e-24 115.9 101 59.4
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.8e-24 115.9 106 57.5
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 4.1e-24 114.8 104 51.0
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.1e-24 114.8 104 54.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 5.3e-24 114.4 106 54.7
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.5e-23 112.8 104 52.9
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 4.5e-23 111.3 102 49.0
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.4e-21 106.3 104 48.1
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 7.9e-20 100.5 103 54.4
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.3e-19 99.8 102 53.9
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.9e-19 98.2 98 56.1
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 9.7e-18 93.6 105 54.3
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 6.9e-16 87.4 59 69.5
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 5.9e-15 84.3 66 63.6
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.0e-14 83.6 61 63.9
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.9e-14 82.0 72 52.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.9e-14 82.0 73 60.3
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 9.4e-13 77.0 105 36.2
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.4e-11 73.2 101 36.6
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 1.5e-07 59.7 31 83.9
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 4.5e-07 58.2 106 30.2
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 2.2e-06 55.8 38 60.5
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 6.5e-06 54.3 31 67.7


User provided reference genes

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