Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 0.0e+00 1144.8 596 100.0
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 3.0e-297 1024.6 597 89.1
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 5.6e-296 1020.4 597 89.6
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 8.2e-295 1016.5 597 89.6
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.6e-293 1011.5 597 88.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.0e-292 1009.6 597 88.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.5e-291 1003.8 597 87.9
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 7.1e-291 1003.4 597 87.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 9.3e-291 1003.0 593 88.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-290 1002.7 593 88.4
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.0e-289 998.0 594 88.2
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 8.7e-289 996.5 594 87.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 5.7e-288 993.8 599 87.3
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.4e-286 989.2 591 88.3
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-285 986.1 591 88.2
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 5.9e-285 983.8 594 87.2
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.2e-284 981.9 591 87.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.3e-283 976.5 593 86.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.4e-278 961.8 591 86.6
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.2e-275 951.4 596 82.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.8e-254 882.5 595 77.0
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.1e-254 881.7 595 78.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.5e-252 874.0 590 77.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.5e-251 872.8 595 76.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.5e-251 872.8 590 77.6
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 9.4e-251 870.2 590 77.5
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.6e-250 869.4 590 77.5
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.1e-250 869.0 590 77.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.7e-250 868.6 594 76.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.6e-250 868.2 590 77.1
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.6e-250 868.2 590 76.4
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 4.7e-250 867.8 595 76.3
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.4e-249 866.3 591 75.8
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.3e-249 865.5 586 75.9
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 4.0e-249 864.8 590 76.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 6.8e-249 864.0 599 75.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 7.5e-248 860.5 591 76.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 9.8e-248 860.1 594 75.9
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 2.8e-247 858.6 592 75.8
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.7e-247 858.2 593 75.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 4.8e-247 857.8 600 73.5
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.1e-246 855.1 589 75.6
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 7.0e-246 854.0 588 76.0
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.6e-245 852.8 594 74.9
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.0e-245 852.4 598 73.6
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.5e-245 851.7 595 74.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.5e-245 851.7 594 74.6
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.5e-245 851.3 598 73.7
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.5e-245 851.3 590 75.1
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 7.7e-245 850.5 591 74.8
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 7.7e-245 850.5 590 75.1
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.0e-244 850.1 590 75.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.3e-244 849.7 593 74.9
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.9e-244 848.6 590 74.9
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.0e-244 847.8 594 75.3
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 8.6e-244 847.0 597 74.0
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.1e-243 846.7 591 74.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.9e-243 845.9 587 74.1
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.5e-243 845.5 590 75.3
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 2.5e-243 845.5 590 75.4
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 4.2e-243 844.7 589 73.9
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 5.5e-243 844.3 599 73.3
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 9.5e-243 843.6 589 74.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.6e-242 842.8 594 74.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.8e-242 842.0 597 74.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.8e-242 842.0 594 74.7
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 4.7e-242 841.3 596 74.3
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.0e-242 840.5 600 73.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.4e-241 839.7 597 74.4
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 8.9e-241 837.0 599 72.5
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.2e-240 836.6 599 72.3
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.6e-240 835.5 589 74.4
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.6e-240 835.5 590 74.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 3.4e-240 835.1 590 74.2
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.4e-240 834.7 590 73.7
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.2e-239 832.4 570 74.6
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.7e-239 831.6 570 74.9
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 4.9e-239 831.2 598 73.7
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.9e-239 831.2 596 72.3
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.8e-238 829.3 588 72.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.2e-237 826.6 599 72.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.0e-237 825.9 626 70.4
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.3e-236 823.2 587 73.4
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.9e-235 819.3 597 71.7
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.9e-235 819.3 593 72.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 4.3e-235 818.1 589 72.2
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.1e-234 815.8 589 73.7
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.0e-233 812.0 564 74.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.0e-233 812.0 696 63.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.5e-232 809.7 618 70.1
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.0e-232 809.3 567 74.4
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 4.4e-232 808.1 596 71.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 6.4e-231 804.3 695 63.7
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.9e-230 802.7 596 71.8
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.0e-228 797.0 508 80.1
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.3e-228 795.8 596 70.6
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.9e-227 792.7 589 71.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.3e-227 792.0 561 74.7
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.3e-225 785.8 597 70.9
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.6e-224 782.3 597 69.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 4.9e-223 778.1 592 70.3
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 3.2e-222 775.4 604 69.2
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 7.0e-222 774.2 597 69.0
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.1e-221 772.7 593 68.0
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.7e-220 769.6 597 69.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.9e-220 768.5 593 67.8
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.9e-220 768.5 511 75.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 9.5e-219 763.8 597 68.5
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.2e-218 763.5 593 66.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.3e-217 759.2 595 67.1
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.6e-216 755.7 597 68.0
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.4e-215 751.1 601 67.4
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 3.2e-214 748.8 570 70.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.1e-212 741.5 592 66.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.8e-209 733.0 522 73.0
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.2e-205 720.3 579 67.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.1e-202 709.5 593 63.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.5e-197 692.2 601 63.6
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.8e-194 682.6 589 62.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.0e-192 676.4 522 69.2
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.3e-186 657.1 488 70.9
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-185 654.1 380 89.7
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.3e-178 630.6 372 88.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.2e-175 619.8 444 74.1
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.0e-172 609.4 478 66.9
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.1e-171 607.4 433 74.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.6e-165 585.9 507 64.5
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.1e-165 585.1 534 61.6
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 8.8e-140 501.5 585 49.4
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 6.5e-135 485.3 587 52.3
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.7e-128 463.4 317 75.7
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.8e-124 448.7 400 62.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.3e-114 415.2 252 83.3
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.0e-111 406.8 309 69.6
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.9e-110 404.1 513 47.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 9.8e-107 391.7 285 73.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.7e-96 357.1 567 41.8
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.4e-92 344.7 210 85.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-84 317.4 227 74.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.9e-80 302.4 183 82.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 4.9e-66 256.5 258 53.9
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 6.9e-60 236.1 347 40.9
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 4.2e-49 200.3 129 78.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 6.1e-48 196.4 266 44.4
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.3e-39 167.9 129 66.7
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.8e-31 141.7 137 58.4
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 6.5e-26 123.2 84 78.6
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 3.0e-23 114.4 109 61.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.1e-20 105.9 107 57.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.8e-20 105.1 217 39.2
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 9.1e-20 102.8 70 78.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 9.1e-20 102.8 70 78.6
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.0e-18 99.4 70 75.7
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 3.8e-18 97.4 52 94.2
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 3.8e-18 97.4 52 94.2
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.8e-18 97.4 187 39.6
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.0e-18 97.1 50 84.0
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.8e-15 88.6 60 76.7
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.5e-14 85.5 52 84.6
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.8e-12 78.6 66 63.6
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.9e-10 71.2 51 66.7
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 100.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.1e-08 65.1 57 56.1
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 3.4e-06 57.8 97 39.2


User provided reference genes

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