Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.0e-157 558.9 260 100.0
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.6e-120 435.6 264 79.9
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.3e-119 433.3 258 79.5
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.2e-119 432.6 266 78.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.4e-118 429.1 236 84.3
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 7.1e-118 427.6 260 79.2
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.7e-116 422.9 239 82.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 8.1e-114 414.1 260 76.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.8e-113 412.9 258 76.4
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.5e-112 409.8 228 82.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.4e-112 408.7 268 74.6
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 6.4e-111 404.4 228 80.7
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 5.4e-110 401.4 228 81.6
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.2e-109 400.2 246 76.8
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.3e-108 396.0 204 87.7
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.1e-108 394.8 217 82.5
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.5e-107 393.3 204 87.3
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.4e-105 386.7 230 77.8
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 8.7e-100 367.5 226 73.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.3e-99 365.5 238 71.0
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-98 363.2 225 74.2
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.1e-98 362.8 222 76.1
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.1e-98 362.8 222 76.1
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.1e-98 362.8 222 76.1
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 8.1e-98 360.9 226 73.0
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 4.0e-97 358.6 249 68.7
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 5.3e-97 358.2 240 68.3
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.9e-97 357.8 234 70.5
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 6.9e-97 357.8 255 65.9
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 9.0e-97 357.5 226 71.7
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 9.0e-97 357.5 234 69.7
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-96 357.1 224 73.2
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.2e-96 357.1 239 69.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.2e-96 357.1 249 68.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.0e-96 356.3 234 70.1
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.6e-96 355.9 226 72.1
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.6e-96 355.9 262 64.1
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 4.5e-96 355.1 226 72.1
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 5.8e-96 354.8 226 71.7
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 7.6e-96 354.4 226 71.2
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-95 353.2 242 69.4
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.7e-95 353.2 238 69.3
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-95 353.2 226 70.8
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.2e-95 352.8 253 66.8
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.9e-95 352.4 234 68.8
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.8e-95 352.1 249 67.9
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 8.4e-95 350.9 268 63.4
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.1e-94 350.5 236 67.8
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.1e-94 350.5 251 66.9
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.4e-94 350.1 224 71.4
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.9e-94 349.7 226 71.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 2.4e-94 349.4 224 71.0
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.2e-94 349.0 234 68.8
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 4.2e-94 348.6 234 67.5
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 5.4e-94 348.2 224 71.4
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.2e-93 347.1 219 72.1
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.7e-93 345.9 221 72.4
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.7e-93 345.9 238 67.6
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 6.0e-93 344.7 234 67.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.0e-92 344.0 223 70.0
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.3e-92 343.6 242 64.5
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.3e-92 343.6 234 67.1
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 3.0e-92 342.4 223 68.6
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 3.9e-92 342.0 225 68.0
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.1e-92 341.7 220 71.8
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 6.7e-92 341.3 234 65.4
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 8.7e-92 340.9 226 68.1
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 8.7e-92 340.9 226 68.1
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-91 340.5 224 68.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.9e-91 339.7 227 68.7
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 3.3e-91 339.0 227 68.7
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 4.3e-91 338.6 236 66.5
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 5.6e-91 338.2 263 62.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 2.1e-90 336.3 257 61.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 2.1e-90 336.3 190 77.4
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 2.8e-90 335.9 190 76.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.7e-90 335.5 190 76.8
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.7e-90 335.5 230 67.4
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.8e-90 335.1 212 72.6
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 8.1e-90 334.3 188 78.2
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 8.1e-90 334.3 225 66.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 8.1e-90 334.3 215 69.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-89 334.0 224 69.6
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.4e-89 333.6 188 77.7
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.4e-89 333.6 217 68.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.4e-89 333.6 222 68.9
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-89 333.2 206 73.3
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.8e-89 333.2 212 71.7
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 2.4e-89 332.8 223 68.2
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.4e-89 332.8 225 68.0
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 3.1e-89 332.4 225 68.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 5.3e-89 331.6 213 70.0
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.3e-89 331.6 242 63.6
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 6.9e-89 331.3 236 63.1
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.2e-88 330.5 226 65.5
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.4e-88 328.9 225 66.2
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 5.8e-88 328.2 223 65.9
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 7.6e-88 327.8 225 66.7
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.3e-87 327.0 212 69.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.7e-87 326.6 208 71.2
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.2e-87 326.2 190 73.7
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.9e-87 325.9 235 65.1
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 3.8e-87 325.5 237 64.6
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 4.9e-87 325.1 206 70.9
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 6.4e-87 324.7 214 69.2
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.1e-86 323.9 191 73.8
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 4.2e-86 322.0 256 61.3
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 7.1e-86 321.2 188 75.0
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 7.1e-86 321.2 191 73.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.6e-85 320.1 204 69.6
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 2.1e-85 319.7 202 70.3
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.7e-85 319.3 188 73.4
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 7.9e-85 317.8 189 72.5
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.1e-83 313.9 230 62.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 5.6e-83 311.6 214 65.0
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 7.4e-83 311.2 219 63.5
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.0e-80 303.1 188 69.1
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.4e-80 302.4 255 60.0
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.9e-78 296.6 188 68.6
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 2.1e-77 293.1 219 58.9
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.3e-76 289.7 224 60.7
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 9.7e-75 284.3 217 60.8
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 3.7e-74 282.3 206 65.5
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 4.8e-74 282.0 224 55.4
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.3e-74 281.6 184 66.8
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 8.2e-74 281.2 184 72.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 9.0e-73 277.7 183 65.6
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.2e-71 273.1 209 59.8
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.9e-70 270.0 259 51.7
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 4.2e-70 268.9 161 73.9
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 4.2e-70 268.9 176 67.0
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 5.5e-70 268.5 213 58.7
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.5e-70 268.5 195 64.1
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 3.6e-69 265.8 182 67.6
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.3e-68 263.8 211 58.8
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.3e-68 263.1 217 56.2
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.3e-67 259.2 227 54.2
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.2e-66 256.5 204 57.8
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 8.2e-66 254.6 213 56.8
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.4e-65 253.8 259 51.0
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.4e-65 253.8 244 51.6
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-65 253.4 155 72.3
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.8e-65 253.4 226 53.1
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.9e-65 251.5 159 68.6
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 9.1e-65 251.1 228 53.5
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.5e-64 250.4 222 53.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.4e-64 249.2 222 53.2
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.5e-64 248.8 217 53.5
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.5e-64 248.8 160 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.4e-60 237.3 178 55.6
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-60 235.3 184 59.8
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.1e-57 225.7 215 53.5
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-56 223.8 215 53.0
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.8e-52 208.0 132 71.2
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.0e-51 206.8 222 42.8
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.7e-50 203.8 245 46.1
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.2e-50 203.4 253 43.5
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.4e-49 200.7 215 46.5
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.2e-47 193.4 130 61.5
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.2e-46 189.5 161 55.3
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 4.2e-46 189.1 206 44.2
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 4.5e-40 169.1 110 71.8
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.7e-39 167.2 93 78.5
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.4e-36 157.5 110 66.4
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.3e-15 87.8 126 35.7
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.2e-11 74.7 48 64.6
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 2.6e-11 73.6 37 78.4


User provided reference genes

Program Settings