Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 8.8e-229 797.0 515 100.0
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 6.1e-97 359.0 211 81.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 4.8e-94 349.4 211 79.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 4.1e-93 346.3 576 46.4
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 4.5e-92 342.8 213 77.5
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 8.5e-91 338.6 214 77.1
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 8.5e-91 338.6 214 77.1
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-90 338.2 248 72.6
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.5e-90 335.9 215 76.3
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 7.2e-90 335.5 213 77.5
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 5.0e-75 286.2 223 66.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 3.1e-72 276.9 508 38.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 3.9e-67 260.0 192 65.6
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.5e-66 257.3 175 73.7
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 4.3e-66 256.5 193 65.3
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.6e-65 253.4 194 64.9
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.1e-64 251.9 196 63.3
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.4e-64 251.5 204 63.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 2.3e-64 250.8 200 62.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 6.8e-64 249.2 192 65.6
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.6e-63 247.3 152 75.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 4.4e-63 246.5 175 70.3
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-61 241.9 185 64.9
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.2e-61 240.4 167 68.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 3.2e-61 240.4 190 62.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.2e-61 240.4 190 62.1
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.4e-61 239.6 208 60.1
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 7.1e-61 239.2 183 62.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.6e-60 238.0 169 68.0
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.7e-60 237.3 153 71.9
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.7e-60 237.3 153 71.9
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 3.5e-60 236.9 177 64.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 4.6e-60 236.5 164 69.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.0e-59 235.3 169 67.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.3e-59 235.0 153 71.2
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.3e-59 234.2 183 61.7
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 5.1e-59 233.0 152 71.7
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.6e-59 232.6 207 56.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-58 231.9 151 71.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-58 231.9 151 71.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.5e-58 231.5 187 60.4
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.5e-58 231.5 209 56.9
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.9e-58 231.1 209 56.9
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.9e-58 231.1 209 56.9
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 7.3e-58 229.2 181 60.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 7.3e-58 229.2 181 60.8
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 7.3e-58 229.2 163 66.3
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.3e-58 229.2 181 62.4
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 4.7e-57 226.5 197 57.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 6.2e-57 226.1 194 57.2
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 6.2e-57 226.1 181 61.9
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 6.2e-57 226.1 180 63.3
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 8.1e-57 225.7 183 59.6
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 8.1e-57 225.7 201 58.2
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 8.1e-57 225.7 194 57.2
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-56 225.3 217 56.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.1e-56 225.3 217 56.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.1e-56 225.3 214 57.5
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-56 225.3 173 63.6
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.8e-56 224.6 214 54.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 3.1e-56 223.8 159 64.2
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 6.8e-56 222.6 158 67.7
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 9.9e-55 218.8 168 60.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 9.9e-55 218.8 208 55.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-54 218.4 161 65.8
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.7e-54 218.0 190 57.4
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.7e-54 218.0 201 57.2
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 4.9e-54 216.5 144 71.5
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 8.3e-54 215.7 190 60.0
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.1e-53 215.3 155 63.9
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.1e-53 215.3 177 60.5
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.4e-53 214.2 176 60.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 3.2e-53 213.8 212 52.8
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 4.1e-53 213.4 174 56.9
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 4.1e-53 213.4 174 56.9
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 4.1e-53 213.4 174 56.9
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 4.1e-53 213.4 174 56.9
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 9.2e-53 212.2 179 54.7
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.2e-52 211.8 105 94.3
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.0e-52 209.5 181 54.1
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 7.8e-52 209.1 176 60.2
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 7.8e-52 209.1 183 53.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 7.8e-52 209.1 204 53.4
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-51 208.4 181 54.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-51 208.0 205 53.2
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.3e-51 207.6 203 54.7
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.3e-51 207.6 203 54.7
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.9e-51 206.8 155 61.9
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.5e-50 204.1 174 56.3
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 3.3e-50 203.8 176 60.2
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.3e-50 203.8 164 57.9
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 3.3e-50 203.8 144 62.5
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 7.3e-50 202.6 140 66.4
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 9.6e-50 202.2 201 51.7
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.6e-49 201.4 165 58.2
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 6.2e-49 199.5 140 65.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.8e-48 198.0 192 50.0
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 2.4e-48 197.6 153 60.1
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 3.1e-48 197.2 177 53.7
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 8.9e-48 195.7 152 56.6
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.6e-47 194.1 176 58.0
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.7e-46 191.4 192 48.4
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.1e-45 188.7 186 54.3
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.2e-45 186.8 197 48.2
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.2e-45 186.8 145 57.2
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.6e-44 184.9 149 56.4
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-43 182.2 207 47.8
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.0e-43 182.2 175 52.0
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-42 177.9 193 47.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 9.6e-42 175.6 177 49.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 6.2e-41 172.9 103 77.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.1e-40 172.2 167 56.9
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.8e-40 171.4 143 58.7
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 2.4e-40 171.0 201 46.8
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.1e-40 170.6 167 55.7
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 5.3e-40 169.9 138 55.8
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.7e-38 164.9 167 49.1
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.8e-38 163.7 173 50.3
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 3.2e-37 160.6 188 45.2
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 9.3e-37 159.1 135 50.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.7e-35 152.5 111 70.3
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 4.3e-34 150.2 97 71.1
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 8.1e-33 146.0 139 51.1
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 4.0e-32 143.7 134 50.7
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 4.0e-32 143.7 99 61.6
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.6e-31 141.0 415 40.2
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.6e-28 131.7 98 64.3
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 2.7e-28 131.0 99 63.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 2.5e-26 124.4 164 37.2
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 5.6e-26 123.2 107 57.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.5e-23 115.2 117 49.6
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.0e-23 114.8 94 55.3
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 5.8e-23 113.2 141 47.5
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.3e-22 112.1 97 54.6
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 3.2e-21 107.5 59 74.6
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.5e-21 106.7 68 70.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 7.1e-21 106.3 80 60.0
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.0e-15 88.2 65 63.1
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.4e-15 87.4 69 59.4
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 7.6e-15 86.3 92 50.0
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.7e-14 85.1 82 52.4
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.7e-14 85.1 92 50.0
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.1e-13 82.4 82 48.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.4e-13 82.0 102 42.2
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.6e-12 77.0 77 54.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 6.7e-11 73.2 64 53.1
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.5e-10 72.0 80 51.2
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 7.7e-07 59.7 36 66.7
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 2.2e-06 58.2 95 41.1
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 5.0e-06 57.0 110 33.6


User provided reference genes

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