Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 2.2e-93 345.5 162 100.0
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-65 253.1 160 78.8
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-65 253.1 160 78.8
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.5e-65 253.1 160 78.8
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.5e-65 253.1 160 78.8
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.4e-63 245.7 151 80.1
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 9.0e-63 243.8 149 81.9
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 9.0e-63 243.8 151 79.5
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 9.0e-63 243.8 149 81.9
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 9.0e-63 243.8 149 81.9
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 2.0e-62 242.7 151 78.8
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.6e-62 242.3 151 78.8
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 3.4e-62 241.9 164 75.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.5e-62 241.5 151 78.8
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.5e-62 241.5 151 77.5
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.5e-62 241.5 151 77.5
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.5e-62 241.5 151 77.5
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.5e-62 241.5 153 76.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.5e-62 241.5 151 78.8
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 5.8e-62 241.1 149 80.5
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 5.8e-62 241.1 149 80.5
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 5.8e-62 241.1 151 78.1
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.6e-62 240.7 158 74.7
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.0e-61 240.4 149 80.5
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.0e-61 240.4 149 78.5
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.0e-61 240.4 149 78.5
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.0e-61 240.4 151 78.1
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-61 240.4 151 78.1
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 1.0e-61 240.4 151 78.1
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.0e-61 240.4 151 78.1
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.0e-61 240.4 158 76.6
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.0e-61 240.4 151 77.5
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.3e-61 240.0 149 80.5
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.7e-61 239.6 151 78.1
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 2.2e-61 239.2 161 75.8
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.9e-61 238.8 151 77.5
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 2.9e-61 238.8 151 77.5
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-61 238.8 151 77.5
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-61 238.8 151 77.5
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.8e-61 238.4 151 77.5
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 4.9e-61 238.0 151 77.5
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 6.5e-61 237.7 155 74.8
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 6.5e-61 237.7 151 77.5
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 6.5e-61 237.7 151 76.8
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.5e-61 237.7 151 77.5
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 8.4e-61 237.3 151 77.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.4e-61 237.3 151 77.5
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 8.4e-61 237.3 151 77.5
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 8.4e-61 237.3 151 77.5
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.1e-60 236.9 151 76.8
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 1.4e-60 236.5 151 76.2
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.4e-60 236.5 151 76.2
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.9e-60 236.1 148 79.7
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.9e-60 236.1 151 76.8
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 1.9e-60 236.1 151 76.8
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 2.5e-60 235.7 151 76.2
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.5e-60 235.7 151 76.2
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 2.5e-60 235.7 151 75.5
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.2e-60 235.0 151 76.2
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 4.2e-60 235.0 151 76.8
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 4.2e-60 235.0 151 75.5
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 5.5e-60 234.6 151 76.2
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 5.5e-60 234.6 151 76.2
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 5.5e-60 234.6 151 76.2
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 7.1e-60 234.2 151 76.2
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 7.1e-60 234.2 151 75.5
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 9.3e-60 233.8 151 74.8
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 9.3e-60 233.8 146 80.1
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 9.3e-60 233.8 152 77.6
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.3e-60 233.8 151 76.2
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 9.3e-60 233.8 151 76.2
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.2e-59 233.4 146 78.8
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.2e-59 233.4 151 74.2
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.6e-59 233.0 151 75.5
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.6e-59 233.0 155 73.5
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.6e-59 233.0 151 74.2
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.1e-59 232.6 145 80.0
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.1e-59 232.6 151 75.5
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 2.7e-59 232.3 149 78.5
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 3.5e-59 231.9 150 76.0
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.5e-59 231.9 150 76.0
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.5e-59 231.9 150 76.0
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 3.5e-59 231.9 151 75.5
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 4.6e-59 231.5 149 75.8
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 4.6e-59 231.5 149 74.5
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 6.0e-59 231.1 151 74.8
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.0e-59 231.1 151 75.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.0e-59 231.1 151 75.5
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-58 230.3 150 75.3
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.3e-58 229.9 148 74.3
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.3e-58 229.2 149 74.5
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.0e-58 228.8 151 73.5
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.9e-58 228.4 149 73.8
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 3.9e-58 228.4 151 74.2
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 5.1e-58 228.0 151 74.8
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.1e-58 228.0 151 73.5
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.7e-58 227.6 151 73.5
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 8.7e-58 227.3 151 72.8
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.5e-57 226.5 151 73.5
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.9e-57 226.1 151 73.5
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.9e-57 226.1 149 73.8
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.9e-57 226.1 149 73.8
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.9e-57 226.1 151 73.5
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.9e-57 226.1 151 73.5
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 2.5e-57 225.7 151 72.8
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 2.5e-57 225.7 151 72.2
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 3.3e-57 225.3 151 71.5
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 3.3e-57 225.3 149 74.5
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 5.7e-57 224.6 153 74.5
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 5.7e-57 224.6 151 72.2
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 9.6e-57 223.8 151 72.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 9.6e-57 223.8 149 72.5
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.3e-56 223.4 151 72.2
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-56 223.0 151 72.2
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-56 223.0 151 72.2
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.8e-56 222.2 136 78.7
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 6.3e-56 221.1 151 71.5
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 6.3e-56 221.1 151 71.5
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 1.4e-55 219.9 149 73.2
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 2.4e-55 219.2 149 71.8
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.4e-55 219.2 145 73.1
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 6.9e-55 217.6 114 90.4
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.2e-54 216.9 145 75.2
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.7e-53 213.0 153 69.3
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.2e-53 212.6 145 72.4
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 3.8e-53 211.8 137 73.7
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 3.8e-53 211.8 196 57.7
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.5e-53 211.1 109 89.0
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.1e-52 210.3 151 67.5
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.9e-52 209.5 151 66.9
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.9e-52 209.5 108 91.7
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 9.3e-52 207.2 108 89.8
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 3.5e-51 205.3 152 68.4
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 6.7e-50 201.1 151 64.2
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 6.7e-50 201.1 151 63.6
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.3e-48 194.5 144 68.1
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 3.2e-44 182.2 151 66.2
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.7e-43 179.1 100 87.0
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 9.1e-39 164.1 149 59.7
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 5.9e-38 161.4 136 60.3
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 6.5e-37 157.9 78 93.6
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.1e-36 157.1 112 68.8
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.4e-36 156.8 179 49.7
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 2.5e-36 156.0 107 72.0
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 4.2e-36 155.2 110 70.9
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 5.5e-36 154.8 107 71.0
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 1.6e-35 153.3 107 71.0
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.1e-35 152.9 151 56.3
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 3.6e-35 152.1 110 68.2
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 7.9e-35 151.0 78 92.3
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.0e-34 150.6 78 89.7
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 8.8e-34 147.5 102 71.6
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.5e-33 146.7 107 68.2
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 5.7e-33 144.8 108 67.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 2.8e-32 142.5 107 65.4
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 8.2e-32 141.0 73 90.4
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 2.2e-29 132.9 64 95.3
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 5.0e-29 131.7 143 51.0
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 8.5e-29 131.0 70 87.1
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.9e-28 129.8 145 50.3
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.1e-25 120.6 154 46.8
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 2.2e-24 116.3 148 47.3
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 3.8e-21 105.5 57 87.7
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 2.5e-20 102.8 83 62.7
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 1.5e-17 93.6 83 60.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 8.3e-16 87.8 44 93.2


User provided reference genes

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