Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 0.0e+00 1228.8 609 100.0
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 3.9e-308 1060.8 609 86.0
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.7e-300 1035.4 609 84.4
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 2.3e-300 1035.0 609 83.7
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.6e-298 1028.9 609 83.4
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 2.0e-296 1021.9 609 83.3
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 5.4e-294 1013.8 609 82.4
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 3.6e-290 1001.1 612 82.7
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 4.7e-290 1000.7 585 84.6
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 4.7e-290 1000.7 612 82.7
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.3e-287 992.6 610 81.8
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 8.3e-287 989.9 611 82.3
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 1.1e-286 989.6 611 82.2
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 1.9e-286 988.8 611 82.2
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 3.2e-270 934.9 610 76.1
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 3.5e-224 781.9 588 67.5
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.0e-216 756.1 629 63.1
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.8e-212 743.0 617 62.7
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 4.8e-210 734.9 610 63.0
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 1.1e-209 733.8 618 62.1
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 9.1e-209 730.7 592 63.5
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.9e-206 723.0 595 63.2
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 4.2e-206 721.8 587 63.9
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 5.5e-206 721.5 605 61.0
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 7.2e-206 721.1 595 63.2
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.0e-204 717.2 621 60.9
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.2e-203 713.8 608 62.3
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 4.4e-203 711.8 594 63.8
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 5.7e-203 711.4 617 60.1
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 7.5e-203 711.1 613 61.7
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.2e-202 709.5 603 61.0
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.2e-202 709.5 613 61.5
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 3.1e-201 705.7 624 58.8
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 7.0e-201 704.5 594 62.8
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 3.5e-200 702.2 595 62.9
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 7.7e-200 701.0 616 59.7
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.7e-199 699.9 599 61.6
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.9e-199 699.1 605 61.8
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 3.3e-198 695.7 605 61.7
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 2.8e-197 692.6 616 58.3
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 4.7e-197 691.8 608 59.4
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 4.7e-197 691.8 615 59.8
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 1.0e-196 690.6 615 59.8
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 4.0e-196 688.7 616 57.8
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.6e-195 686.0 580 61.4
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 2.6e-195 686.0 591 59.4
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 4.4e-195 685.3 589 61.6
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 4.4e-195 685.3 616 59.4
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.7e-194 683.3 612 59.8
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.9e-194 682.6 598 60.7
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 6.4e-194 681.4 589 62.3
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.4e-193 680.2 598 60.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 7.0e-193 677.9 603 58.9
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-191 674.1 624 57.2
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 1.3e-191 673.7 583 60.9
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-191 672.9 626 57.2
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 2.3e-191 672.9 603 59.4
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 3.9e-191 672.2 619 57.8
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 6.6e-191 671.4 618 58.7
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 8.6e-191 671.0 622 58.4
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 3.6e-189 665.6 601 57.2
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 4.7e-189 665.2 583 59.9
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 4.7e-189 665.2 617 58.8
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.8e-188 663.3 612 56.7
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.8e-188 663.3 614 57.0
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.1e-188 662.5 603 58.7
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 3.1e-188 662.5 587 58.9
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 3.1e-188 662.5 620 57.9
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 4.0e-188 662.1 613 58.6
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 5.2e-188 661.8 612 56.4
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 4.9e-186 655.2 624 56.6
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 1.1e-185 654.1 602 57.0
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.9e-185 653.3 542 64.4
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-184 650.6 583 57.8
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 2.7e-184 649.4 600 56.7
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 3.0e-183 646.0 637 54.6
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 5.0e-183 645.2 563 60.4
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 4.3e-182 642.1 601 54.6
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 9.5e-182 641.0 626 55.6
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.2e-181 640.6 647 55.3
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 5.2e-180 635.2 593 56.5
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 5.2e-180 635.2 626 54.5
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.3e-178 630.6 618 55.5
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.9e-177 626.7 588 57.7
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.0e-175 619.4 521 63.5
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.9e-174 616.7 570 56.7
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 2.8e-173 612.8 610 54.8
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 5.2e-172 608.6 605 55.5
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.2e-171 607.4 567 58.4
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 3.4e-171 605.9 683 50.4
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.8e-171 605.1 602 54.3
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 5.8e-171 605.1 581 58.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 3.2e-169 599.4 594 53.7
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 9.6e-166 587.8 590 53.6
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 1.9e-161 573.5 595 51.8
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 4.6e-160 568.9 589 53.0
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 5.1e-159 565.5 605 53.9
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.1e-158 564.3 592 51.4
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 2.1e-157 560.1 610 51.5
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 4.0e-156 555.8 593 53.6
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 9.0e-156 554.7 598 50.8
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 4.5e-155 552.4 606 51.8
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 4.6e-152 542.3 601 52.1
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 4.0e-148 529.3 558 54.3
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 7.1e-145 518.5 557 52.1
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-144 517.7 604 49.0
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 4.6e-144 515.8 454 59.9
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 3.3e-142 509.6 550 50.9
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 8.1e-141 505.0 347 72.0
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.8e-130 469.5 459 56.0
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 3.7e-125 453.0 608 43.9
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.0e-119 434.9 426 54.2
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 7.0e-108 395.6 616 38.0
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 1.1e-105 388.3 525 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 9.7e-102 375.2 572 39.3
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.0e-98 365.2 577 36.7
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.4e-84 316.2 367 49.3
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.6e-80 303.5 386 45.9
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 3.4e-78 297.0 261 58.2
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 7.8e-75 285.8 400 43.5
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 4.9e-69 266.5 238 58.4
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.9e-65 254.6 451 33.9
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 3.6e-64 250.4 225 58.2
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 8.1e-56 222.6 368 41.0
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 4.0e-55 220.3 189 58.7
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 5.4e-52 209.9 211 55.0
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 5.6e-33 146.7 203 45.8
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 6.2e-32 143.3 222 43.7
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.2e-30 139.0 149 45.6
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 4.9e-29 133.7 273 35.2
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.4e-22 110.9 333 28.5
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 8.4e-21 106.3 76 71.1
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 9.3e-20 102.8 234 33.8
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 2.1e-19 101.7 418 22.5
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 2.6e-14 84.7 168 32.7
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 4.5e-14 84.0 85 55.3
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.3e-13 82.4 51 68.6
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 6.7e-10 70.1 54 63.0


User provided reference genes

Program Settings