Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 3668.6 1857 100.0
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 3481.4 1821 96.7
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2811.9 1844 77.2
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2800.0 1844 77.1
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2797.3 1844 77.2
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2773.8 1843 77.2
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2773.4 1844 76.7
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2732.6 1843 75.6
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2726.4 1844 75.7
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2713.7 1844 75.4
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2704.1 1865 74.6
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2697.9 1868 74.4
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2539.6 1854 70.2
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2054.6 1912 58.1
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2050.0 1894 57.8
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2038.5 1930 57.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2031.9 1913 57.6
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2031.5 1926 57.1
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2026.1 1924 57.1
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2025.4 1913 56.7
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2016.1 1910 56.9
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2008.8 1931 56.8
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2007.6 1920 56.9
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2003.0 1921 56.4
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1996.9 1919 57.4
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1986.1 1908 56.9
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1974.5 1911 56.9
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1974.5 1930 56.0
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1973.4 1914 56.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1970.3 1893 56.9
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1961.8 1977 54.6
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1959.9 1937 54.5
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1945.2 1924 55.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1944.1 1900 55.1
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1942.5 1928 55.5
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1942.2 1937 54.4
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1936.0 1935 54.6
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1923.7 1914 55.4
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1922.9 1919 54.8
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1921.7 1931 54.7
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1918.3 1922 54.8
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1916.4 1899 54.8
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1914.4 1929 54.8
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1914.0 1906 55.3
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1910.2 1848 56.2
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1909.4 1929 54.8
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1907.9 1926 54.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1901.7 2003 52.8
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1898.2 1913 55.0
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1882.5 1931 54.1
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1868.2 1919 53.4
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1865.1 2065 51.4
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1860.1 1934 54.2
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1857.0 1945 53.5
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1845.5 1921 52.5
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1842.8 1917 52.3
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1838.2 1921 52.0
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1834.7 1983 51.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1829.7 1967 51.9
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1828.5 1911 52.5
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1828.5 1780 56.6
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1821.2 1942 51.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1817.4 1896 52.5
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1812.3 1902 52.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1809.7 1901 52.0
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1801.9 1890 52.3
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1791.5 1909 51.2
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1766.5 1948 50.4
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1762.7 1874 51.6
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1760.0 2027 49.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1753.4 1860 51.6
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1721.1 1884 50.6
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1719.5 1887 51.3
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1717.2 1860 50.8
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1717.2 1911 49.8
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1704.5 1765 52.8
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1699.5 1882 50.3
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1696.8 1944 50.0
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1664.8 1921 49.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1634.8 1903 49.4
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1605.9 2076 45.3
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1522.7 1918 47.5
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1483.8 1584 53.0
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1462.2 1539 52.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1380.9 1750 46.0
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1335.9 1863 43.3
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1258.4 1351 52.6
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1158.3 2144 35.7
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1151.7 1062 58.2
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1106.7 2166 34.9
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1099.0 1905 37.2
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 0.0e+00 1085.1 678 79.8
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 6.7e-295 1018.5 2072 34.7
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.8e-255 887.5 688 66.3
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 4.6e-219 766.5 774 54.1
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.9e-212 744.6 1179 39.9
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 3.4e-206 723.8 2097 28.8
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.4e-204 718.4 1365 36.9
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.1e-200 704.5 699 55.8
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 9.6e-185 652.5 748 49.7
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.2e-166 592.4 702 49.6
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 2.2e-152 545.0 789 43.5
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 3.2e-103 381.7 384 52.6
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 4.1e-103 381.3 385 52.5
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.6e-75 289.7 225 67.1
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.2e-70 273.5 185 69.7
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 4.8e-67 261.5 224 60.7
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 8.4e-64 250.8 478 36.6
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 2.6e-57 229.2 283 45.6
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 2.1e-54 219.5 304 42.4
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 7.9e-54 217.6 271 44.6
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.5e-49 201.8 124 77.4
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.9e-45 188.7 209 49.8
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 9.1e-34 151.0 239 41.4
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.2e-28 134.0 115 54.8
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.3e-27 130.6 80 81.2
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.7e-22 112.8 128 47.7
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 7.0e-18 98.2 129 41.9
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 7.0e-18 98.2 90 53.3
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 2.7e-17 96.3 69 65.2
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 3.4e-12 79.3 74 56.8
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.8e-10 73.6 61 52.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 9.2e-10 71.2 67 50.7
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.3e-08 67.4 82 51.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.7e-08 67.0 70 51.4


User provided reference genes

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