Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 6.1e-177 624.0 309 100.0
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 4.0e-168 594.7 309 92.9
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 1.2e-167 593.2 309 92.9
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 2.4e-165 585.5 310 91.9
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 3.5e-164 581.6 314 90.4
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 7.7e-164 580.5 308 91.2
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 6.6e-163 577.4 308 90.6
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 8.6e-163 577.0 307 90.9
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.5e-162 575.5 308 90.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 3.3e-162 575.1 307 90.6
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 2.1e-161 572.4 309 90.0
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.1e-161 572.4 308 89.6
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 3.6e-161 571.6 309 89.6
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 4.0e-160 568.2 307 89.6
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 5.7e-159 564.3 307 88.9
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.8e-158 562.0 308 85.1
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.1e-154 550.1 314 86.3
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 2.3e-139 499.2 300 77.3
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 3.0e-139 498.8 300 77.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 2.5e-138 495.7 300 78.7
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.5e-138 495.7 300 77.3
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.8e-137 492.3 300 76.3
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.1e-136 490.3 309 73.8
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.8e-136 489.6 300 76.7
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 4.0e-136 488.4 305 73.8
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 4.0e-136 488.4 309 74.4
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 4.0e-136 488.4 297 74.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 8.9e-136 487.3 309 74.1
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 9.9e-135 483.8 309 74.4
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.2e-134 482.6 309 73.5
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.9e-134 482.3 300 75.7
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.9e-134 482.3 302 73.2
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.4e-134 481.1 300 75.7
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 8.3e-134 480.7 306 71.6
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.1e-133 480.3 309 72.5
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.4e-133 479.2 306 71.6
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.4e-133 479.2 309 72.2
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.1e-133 478.4 309 71.2
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 7.1e-133 477.6 309 72.5
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 1.2e-132 476.9 305 73.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.6e-132 476.5 309 71.2
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.7e-132 475.7 309 72.5
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 4.6e-132 474.9 309 71.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 4.6e-132 474.9 303 71.6
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.8e-132 474.2 300 74.7
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.0e-131 473.8 309 72.2
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.3e-131 473.4 311 70.4
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 3.0e-131 472.2 306 72.2
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 5.1e-131 471.5 309 71.8
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 5.1e-131 471.5 308 72.1
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 6.6e-131 471.1 309 71.2
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 8.6e-131 470.7 309 71.2
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.9e-130 469.5 309 72.8
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.3e-130 468.8 309 71.8
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 3.3e-130 468.8 307 70.4
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 4.3e-130 468.4 309 70.9
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.3e-130 468.4 311 71.7
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 7.3e-130 467.6 307 72.0
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 7.3e-130 467.6 312 69.2
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.2e-129 466.8 309 68.9
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.1e-129 466.1 306 69.9
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.8e-129 465.7 309 70.2
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.7e-129 464.9 311 68.2
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 8.1e-129 464.2 310 71.0
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 8.1e-129 464.2 309 69.9
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.8e-128 463.0 309 70.9
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.1e-128 462.2 306 69.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.0e-128 461.8 309 71.5
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 4.0e-128 461.8 309 70.6
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 5.2e-128 461.5 309 69.3
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 5.2e-128 461.5 308 70.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.5e-127 459.9 309 69.9
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 2.0e-127 459.5 311 67.8
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 3.4e-127 458.8 306 68.6
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.4e-127 458.8 311 67.2
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 5.8e-127 458.0 313 67.4
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 7.6e-127 457.6 309 69.3
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 7.6e-127 457.6 309 68.6
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.3e-126 456.8 306 68.3
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.9e-126 455.7 305 69.8
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 8.4e-126 454.1 309 69.6
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 8.4e-126 454.1 309 69.6
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.9e-125 453.0 309 67.3
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.6e-124 449.9 309 67.3
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 2.1e-124 449.5 309 69.9
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 6.0e-124 448.0 383 57.2
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.7e-123 446.4 298 67.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.3e-123 446.0 306 67.6
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.3e-123 446.0 333 65.8
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 5.1e-123 444.9 305 68.9
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.5e-122 442.6 306 67.3
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.5e-122 442.6 308 70.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 5.6e-122 441.4 308 69.8
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 7.3e-122 441.0 306 67.6
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 3.6e-121 438.7 345 63.5
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 6.2e-121 438.0 381 57.5
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 6.2e-121 438.0 309 64.1
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 2.9e-118 429.1 305 68.2
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 8.4e-118 427.6 318 67.0
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.9e-117 426.4 309 68.3
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 2.3e-115 419.5 309 65.4
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 2.5e-114 416.0 297 64.6
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 4.5e-111 405.2 269 69.1
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.2e-110 402.9 297 63.3
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.5e-106 390.2 262 70.2
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.1e-105 386.3 210 89.0
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.8e-104 383.3 262 68.3
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 6.9e-104 381.3 265 66.0
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.7e-98 361.7 238 69.7
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.3e-94 350.5 302 55.0
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.0e-91 340.9 301 55.8
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 4.8e-89 332.0 289 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 4.5e-87 325.5 301 53.5
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 7.7e-87 324.7 201 75.1
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 3.8e-86 322.4 263 60.8
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 3.6e-84 315.8 216 66.2
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 5.1e-83 312.0 303 53.1
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.2e-76 290.8 177 72.3
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 3.3e-74 282.7 177 70.1
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 2.6e-66 256.5 170 75.3
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.3e-66 256.1 237 49.8
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.2e-62 243.4 181 66.9
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 5.0e-62 242.3 130 92.3
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 6.5e-62 241.9 178 65.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.3e-57 227.6 142 73.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.8e-51 207.2 188 53.7
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 3.5e-47 193.0 127 70.9
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.8e-46 189.5 130 66.2
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 5.2e-43 179.1 130 67.7
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 9.8e-42 174.9 107 74.8
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.3e-37 159.8 145 54.5
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.4e-35 154.5 110 69.1
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 6.4e-33 145.6 112 64.3
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.9e-32 144.1 109 62.4
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.2e-32 143.3 109 64.2
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.2e-19 99.4 74 60.8
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 7.1e-16 89.0 52 73.1
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 3.2e-08 63.5 27 100.0


User provided reference genes

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