Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.6e-39 165.6 81 100.0
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.9e-37 158.7 80 95.0
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 3.2e-37 157.9 80 95.0
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 5.5e-37 157.1 80 93.8
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 7.2e-37 156.8 80 92.5
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 7.2e-37 156.8 80 92.5
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 7.2e-37 156.8 80 93.8
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 7.2e-37 156.8 80 92.5
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 4.7e-36 154.1 80 91.2
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 1.7e-33 145.6 74 93.2
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.7e-33 145.6 74 93.2
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.7e-33 145.6 80 86.2
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 4.9e-33 144.1 73 93.2
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 4.9e-33 144.1 73 93.2
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 6.3e-33 143.7 80 85.0
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 2.4e-32 141.7 80 82.5
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 4.1e-32 141.0 80 82.5
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 9.2e-32 139.8 80 82.5
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 2.0e-31 138.7 80 81.2
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 3.5e-31 137.9 80 81.2
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 3.5e-31 137.9 80 81.2
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 4.5e-31 137.5 79 79.7
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 4.5e-31 137.5 80 78.8
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 5.9e-31 137.1 80 80.0
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.8e-31 136.7 80 77.5
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 7.8e-31 136.7 80 80.0
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 7.8e-31 136.7 80 80.0
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.3e-30 136.0 80 78.8
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.3e-30 136.0 76 80.3
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.7e-30 135.6 79 78.5
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 1.7e-30 135.6 80 80.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.7e-30 135.6 79 79.7
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.3e-30 135.2 80 76.2
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.3e-30 135.2 80 76.2
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 5.0e-30 134.0 79 77.2
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 5.0e-30 134.0 79 75.9
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 6.6e-30 133.7 80 76.2
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 6.6e-30 133.7 79 77.2
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 8.6e-30 133.3 80 76.2
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 8.6e-30 133.3 79 78.5
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.1e-29 132.9 76 78.9
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-29 132.9 80 73.8
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.1e-29 132.9 80 73.8
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.5e-29 132.5 80 76.2
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.5e-29 132.5 79 78.5
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.9e-29 132.1 80 76.2
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 1.9e-29 132.1 79 77.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.5e-29 131.7 79 77.2
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 3.3e-29 131.3 76 78.9
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 3.3e-29 131.3 79 74.7
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 3.3e-29 131.3 80 77.5
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 5.6e-29 130.6 79 77.2
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 5.6e-29 130.6 80 73.8
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 5.6e-29 130.6 80 73.8
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 5.6e-29 130.6 80 73.8
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 5.6e-29 130.6 80 75.0
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 7.3e-29 130.2 80 75.0
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 9.5e-29 129.8 79 75.9
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 9.5e-29 129.8 80 75.0
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.2e-28 129.4 80 72.5
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 1.2e-28 129.4 80 76.2
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.2e-28 129.4 76 78.9
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 2.1e-28 128.6 79 75.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 2.1e-28 128.6 74 81.1
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 4.7e-28 127.5 79 74.7
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.7e-28 127.5 80 70.0
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 4.7e-28 127.5 74 79.7
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 6.1e-28 127.1 80 71.2
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 1.0e-27 126.3 79 72.2
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.0e-27 126.3 80 72.5
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.4e-27 125.9 81 72.8
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.8e-27 125.6 80 70.0
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 2.3e-27 125.2 73 79.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.0e-27 124.8 74 78.4
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 3.0e-27 124.8 74 78.4
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 4.0e-27 124.4 80 72.5
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.2e-26 122.9 74 77.0
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.2e-26 122.9 74 77.0
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.5e-26 122.5 76 73.7
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.0e-26 122.1 73 78.1
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.6e-26 121.7 74 78.4
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.6e-26 121.7 74 78.4
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 4.4e-26 120.9 74 77.0
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 4.4e-26 120.9 76 71.1
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 7.5e-26 120.2 74 77.0
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.5e-26 120.2 75 72.0
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 9.8e-26 119.8 74 74.3
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 9.8e-26 119.8 78 69.2
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.2e-25 118.6 73 76.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.2e-25 118.6 75 70.7
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 2.2e-25 118.6 74 75.7
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 3.7e-25 117.9 74 75.7
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.9e-25 117.5 75 70.7
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 4.9e-25 117.5 74 74.3
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.1e-24 116.3 78 69.2
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 9.2e-24 113.2 81 67.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.6e-23 112.5 96 60.4
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.0e-23 112.1 74 75.7
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 4.6e-23 110.9 90 63.3
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.7e-22 109.0 74 64.9
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 3.0e-22 108.2 74 66.2
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 5.0e-22 107.5 90 58.9
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.1e-21 106.3 76 68.4
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.8e-20 101.7 76 61.8
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 6.2e-20 100.5 76 60.5
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 7.0e-16 87.0 63 68.3
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.7e-15 85.1 56 69.6
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 5.0e-14 80.9 56 64.3
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 6.2e-12 73.9 36 94.4
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 2.3e-11 72.0 79 48.1
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.5e-10 69.3 51 64.7
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 4.4e-10 67.8 51 62.7
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 7.5e-10 67.0 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 6.4e-09 63.9 40 67.5
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 6.4e-09 63.9 51 58.8
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 8.3e-09 63.5 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 1.1e-08 63.2 35 85.7
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-07 59.3 37 67.6
BcaC05g29972 Brassica carinata HOM05D000160 ORTHO05D000914 1.3e-06 56.2 28 89.3


User provided reference genes

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