Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G14880 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.4e-307 1058.9 569 100.0
Aa31LG5G19350 Aethionema arabicum HOM05D002352 ORTHO05D003724 4.6e-61 240.0 218 61.9
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 5.8e-48 196.4 198 56.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 5.8e-48 196.4 198 56.6
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 5.8e-48 196.4 198 56.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 5.8e-48 196.4 198 56.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.7e-47 194.9 198 56.1
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.7e-47 194.9 198 56.1
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.7e-47 194.9 198 56.1
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.7e-47 194.9 198 56.1
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.2e-47 194.5 198 56.6
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.1e-46 192.2 198 55.6
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 3.2e-46 190.7 198 55.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 3.2e-46 190.7 198 55.1
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.2e-45 188.7 222 51.8
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.7e-45 187.6 221 49.8
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.3e-44 184.5 198 53.5
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.0e-44 184.1 222 50.0
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 3.0e-44 184.1 237 46.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 3.0e-44 184.1 246 46.7
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 6.6e-44 183.0 198 52.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 8.7e-44 182.6 198 52.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 8.7e-44 182.6 198 51.5
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.1e-43 182.2 239 46.0
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.1e-43 182.2 198 51.0
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.1e-43 182.2 237 47.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.9e-43 181.4 222 49.5
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 2.5e-43 181.0 198 52.0
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 2.5e-43 181.0 198 51.5
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 2.5e-43 181.0 198 51.0
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.5e-43 181.0 198 52.5
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 2.5e-43 181.0 198 51.5
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.3e-43 180.6 198 51.0
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 3.3e-43 180.6 198 52.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 3.3e-43 180.6 198 51.5
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 4.3e-43 180.3 198 51.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 4.3e-43 180.3 198 53.0
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.3e-43 180.3 198 51.0
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 4.3e-43 180.3 198 52.0
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 5.6e-43 179.9 213 49.8
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.3e-43 179.5 222 47.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.6e-43 179.1 198 51.0
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 9.6e-43 179.1 251 45.4
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.2e-42 178.7 198 51.0
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.2e-42 178.7 220 48.6
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.2e-42 178.7 198 51.5
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.2e-42 178.7 198 50.5
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.6e-42 178.3 198 50.0
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.6e-42 178.3 198 52.0
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.1e-42 177.9 215 49.3
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.1e-42 177.9 213 48.4
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 2.8e-42 177.6 198 52.0
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 2.8e-42 177.6 198 51.5
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.6e-42 177.2 220 46.4
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 3.6e-42 177.2 239 46.9
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 4.7e-42 176.8 198 51.5
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 4.7e-42 176.8 245 46.1
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 6.2e-42 176.4 198 51.0
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 8.1e-42 176.0 198 51.0
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.1e-41 175.6 215 49.3
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.4e-41 175.3 198 51.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.8e-41 174.9 198 51.0
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 2.4e-41 174.5 198 49.0
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.4e-41 174.5 198 50.0
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 3.1e-41 174.1 199 48.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 3.1e-41 174.1 220 47.7
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 3.1e-41 174.1 198 49.0
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 4.0e-41 173.7 198 50.0
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.0e-41 173.7 222 45.9
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 5.3e-41 173.3 222 46.4
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 6.9e-41 172.9 198 50.0
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 6.9e-41 172.9 222 47.7
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 9.0e-41 172.6 198 49.0
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 9.0e-41 172.6 198 49.0
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.2e-40 172.2 201 50.2
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.0e-40 171.4 198 50.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.0e-40 171.4 198 50.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.6e-40 171.0 198 49.0
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 3.4e-40 170.6 222 46.4
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 5.8e-40 169.9 198 49.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.8e-40 169.9 215 46.5
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 7.6e-40 169.5 198 49.5
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 7.6e-40 169.5 198 51.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.3e-39 168.7 198 50.5
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.3e-39 168.7 198 48.5
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.3e-39 168.7 209 47.4
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.7e-39 168.3 198 48.5
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.7e-39 168.3 198 47.5
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.2e-39 167.9 198 49.0
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.2e-39 167.9 198 48.0
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.9e-39 167.5 216 46.3
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.9e-39 167.5 203 48.3
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.8e-39 167.2 198 49.5
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 8.4e-39 166.0 198 47.0
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.4e-38 165.2 213 44.1
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.9e-38 164.9 198 46.5
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.9e-38 164.9 198 47.5
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.4e-38 164.5 198 48.5
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.2e-38 164.1 198 46.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.2e-38 164.1 198 48.0
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.2e-38 164.1 208 47.6
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 4.2e-38 163.7 198 46.0
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.2e-38 163.7 198 48.5
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 5.4e-38 163.3 217 46.5
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 5.4e-38 163.3 198 48.5
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 7.1e-38 162.9 222 45.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 9.3e-38 162.5 198 46.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.2e-37 162.2 198 49.0
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 3.5e-37 160.6 222 45.0
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 3.5e-37 160.6 215 44.2
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.3e-36 158.7 198 46.0
Lalb_Chr21g0313511 Lupinus albus HOM05D002352 ORTHO05D003724 1.9e-35 154.8 222 42.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.9e-35 154.8 221 43.4
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.6e-35 153.3 198 46.5
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.8e-34 151.0 198 46.0
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 2.8e-34 151.0 198 42.9
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 2.8e-34 151.0 215 40.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 9.0e-33 146.0 198 44.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.5e-32 145.2 232 40.9
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.9e-30 138.3 216 41.2
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.2e-30 137.5 216 40.7
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.1e-29 134.8 198 42.4
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 7.9e-29 132.9 179 44.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.0e-28 132.5 198 40.9
Actinidia39445 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.7e-28 129.4 129 52.7
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.5e-27 128.6 198 40.9
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 1.9e-27 128.3 198 40.4
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 5.8e-24 116.7 198 39.9
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.1e-22 109.8 198 37.4
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.9e-19 101.7 220 30.5
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.9e-19 101.7 198 35.9
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.5e-19 101.3 189 36.0
MBI19_g04169_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 5.6e-19 100.1 111 47.7
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-16 91.3 75 60.0
Lj2A285G52 Lonicera japonica HOM05D002352 ORTHO05D003724 2.5e-14 84.7 78 59.0
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 4.2e-14 84.0 126 44.4
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.7e-12 76.6 76 52.6
SalBow8G0115 Salvia bowleyana HOM05D000807 ORTHO05D000662 2.2e-10 71.6 75 52.0
Thhalv10011866m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 1.4e-06 58.9 85 30.6
Hund23686 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.9e-06 58.5 67 41.8


User provided reference genes

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