Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.7e-132 475.3 241 100.0
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.4e-67 259.6 273 57.9
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.8e-65 252.3 274 57.7
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 8.4e-65 251.1 267 58.8
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.4e-64 250.4 272 57.4
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 6.0e-63 245.0 270 55.2
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 7.9e-63 244.6 261 58.6
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.7e-62 243.4 268 56.3
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 6.6e-62 241.5 272 56.2
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.5e-61 239.6 265 55.8
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.1e-60 236.5 265 57.7
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 8.1e-60 234.6 263 55.5
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 8.1e-60 234.6 263 55.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 1.3e-57 227.3 266 56.0
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.1e-56 224.2 274 52.2
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.3e-54 216.5 296 50.0
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 5.1e-54 215.3 290 49.7
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.1e-52 209.9 296 49.7
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.1e-51 206.1 290 48.3
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 5.5e-48 195.3 290 45.5
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 5.5e-48 195.3 278 45.0
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 9.3e-48 194.5 304 45.4
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-47 193.4 278 44.6
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 2.1e-47 193.4 278 44.6
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 2.1e-47 193.4 278 44.6
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.7e-47 193.0 291 45.4
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 3.0e-46 189.5 284 45.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 8.7e-46 188.0 291 45.7
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 3.3e-45 186.0 285 43.5
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 5.7e-45 185.3 290 43.8
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 7.4e-45 184.9 281 43.4
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 5.9e-42 175.3 286 43.0
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 7.6e-42 174.9 210 51.0
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 7.6e-42 174.9 286 43.0
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 7.6e-42 174.9 281 44.1
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.3e-41 174.1 288 44.1
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.7e-41 173.7 284 42.3
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.9e-40 170.2 286 42.0
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 5.1e-38 162.2 268 42.5
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.5e-34 149.1 266 41.7
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 2.2e-33 146.7 284 38.7
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 2.3e-30 136.7 303 34.7
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 5.1e-30 135.6 301 35.5
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 5.1e-30 135.6 301 35.5
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.5e-29 134.0 258 35.3
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.0e-29 133.7 282 39.0
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.6e-29 133.3 287 34.5
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 4.4e-29 132.5 300 35.0
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.4e-29 132.5 303 35.0
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 5.7e-29 132.1 258 34.9
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.7e-29 132.1 257 41.2
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 7.4e-29 131.7 303 34.3
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 2.2e-28 130.2 301 36.2
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.7e-28 129.4 279 37.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.4e-27 126.7 258 35.7
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.1e-27 125.9 301 33.6
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 7.7e-26 121.7 290 35.5
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 7.7e-26 121.7 280 34.6
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.0e-25 121.3 297 33.7
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.4e-24 117.5 286 35.0
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.9e-24 117.1 286 33.2
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 3.2e-24 116.3 263 33.1
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 4.2e-24 115.9 301 34.9
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 7.2e-24 115.2 302 33.1
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 9.4e-24 114.8 277 31.4
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.2e-23 114.4 300 34.3
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.6e-23 114.0 261 33.3
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 3.6e-23 112.8 255 31.8
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.6e-23 112.8 268 35.8
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 3.6e-23 112.8 296 33.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.7e-23 112.5 306 29.7
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.9e-23 111.7 253 33.6
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 2.3e-22 110.2 285 33.0
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 8.8e-22 108.2 241 32.0
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.1e-21 107.8 303 30.0
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 1.1e-21 107.8 261 33.3
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.6e-21 106.7 217 34.6
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 2.6e-21 106.7 284 30.6
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.3e-21 106.3 268 33.2
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.4e-21 105.9 299 31.1
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 9.7e-21 104.8 319 30.7
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-20 104.4 266 32.3
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 1.3e-20 104.4 283 31.4
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.7e-20 102.8 306 30.7
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 3.7e-20 102.8 298 30.9
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 4.8e-20 102.4 303 29.0
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 4.8e-20 102.4 288 31.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 6.3e-20 102.1 304 30.9
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.3e-20 102.1 302 33.1
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 6.3e-20 102.1 292 30.8
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.1e-19 101.3 192 38.5
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.4e-19 100.9 248 30.2
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.8e-19 100.5 269 30.9
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 2.4e-19 100.1 292 30.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 2.4e-19 100.1 310 30.3
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 5.3e-19 99.0 161 38.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 9.1e-19 98.2 279 33.3
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 2.0e-18 97.1 288 31.9
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 2.0e-18 97.1 293 30.7
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.6e-18 96.7 297 30.0
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 3.5e-18 96.3 171 39.2
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 4.5e-18 95.9 285 30.2
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 5.9e-18 95.5 288 30.6
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 5.9e-18 95.5 245 33.9
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 7.7e-18 95.1 255 32.5
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.0e-17 94.7 287 32.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.0e-17 94.7 303 29.4
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.3e-17 94.4 286 30.4
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 2.9e-17 93.2 111 45.0
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 3.8e-17 92.8 241 29.9
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.0e-17 92.4 280 31.1
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 5.0e-17 92.4 294 31.0
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 8.5e-17 91.7 173 35.8
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.5e-16 90.9 293 30.4
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.9e-16 90.5 271 29.5
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.5e-16 90.1 114 45.6
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.5e-16 90.1 278 30.9
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.2e-16 89.7 111 45.9
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 4.2e-16 89.4 168 38.1
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.2e-15 87.8 111 43.2
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.2e-15 87.8 230 31.7
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.6e-15 87.4 279 31.2
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 2.1e-15 87.0 307 28.3
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 3.6e-15 86.3 310 29.7
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 3.6e-15 86.3 314 29.3
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.7e-15 85.9 166 39.2
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 6.1e-15 85.5 158 36.7
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 6.1e-15 85.5 157 40.1
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 1.0e-14 84.7 297 31.0
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.0e-14 84.7 166 38.0
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.4e-14 84.3 298 27.9
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.8e-14 84.0 310 29.0
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.0e-14 82.8 289 31.1
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.2e-13 81.3 283 29.0
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 3.3e-13 79.7 173 38.2
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.4e-13 79.3 176 34.1
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.4e-13 79.3 292 29.1
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.7e-13 79.0 301 29.2
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 7.5e-13 78.6 255 30.2
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 7.5e-13 78.6 110 42.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 9.7e-13 78.2 307 29.3
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.3e-12 77.8 270 31.1
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.7e-12 77.4 95 46.3
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.7e-12 77.4 272 30.1
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.2e-12 77.0 249 32.9
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.8e-12 76.6 281 28.5
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.7e-12 76.3 121 41.3
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.1e-11 73.2 283 28.6
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 3.1e-11 73.2 100 41.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 5.3e-11 72.4 164 34.8
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 5.3e-11 72.4 249 32.1
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 9.1e-11 71.6 94 43.6
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 9.1e-11 71.6 267 29.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.6e-10 70.9 175 36.0
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.6e-10 70.9 267 29.2
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.5e-10 69.3 244 28.3
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.5e-10 69.3 152 32.2
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.0e-09 68.2 241 29.9
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.7e-09 67.4 245 30.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 2.2e-09 67.0 169 30.2
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.2e-09 67.0 259 27.8
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 5.0e-09 65.9 110 34.5
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.5e-08 64.3 151 32.5
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-08 63.9 168 29.8
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.9e-08 63.9 259 25.9
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.5e-08 63.5 154 30.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.2e-08 63.2 69 43.5
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.6e-07 60.8 271 27.7
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.6e-07 60.8 138 30.4
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.6e-07 60.8 237 28.3
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 4.7e-07 59.3 244 27.9
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 6.1e-07 58.9 93 34.4
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.4e-06 57.8 92 37.0
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.8e-06 57.4 175 30.9
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.0e-06 56.6 275 24.0
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 8.8e-06 55.1 94 38.3


User provided reference genes

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