Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 3.0e-145 518.5 256 100.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.4e-96 355.5 265 71.3
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.4e-94 349.4 268 69.8
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 7.7e-93 344.4 255 72.2
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.9e-92 342.4 265 67.9
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 6.6e-92 341.3 265 67.2
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 4.2e-91 338.6 266 68.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 9.5e-91 337.4 262 69.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-90 337.0 265 67.2
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.6e-90 336.7 265 67.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 3.6e-90 335.5 263 68.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.7e-87 325.5 260 68.1
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.0e-76 290.8 263 59.3
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.8e-55 219.2 284 46.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.9e-54 216.9 271 47.2
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.6e-53 212.2 270 45.9
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.3e-52 210.7 280 44.3
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.5e-51 206.5 279 45.2
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.5e-51 206.5 259 47.9
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 4.3e-51 205.7 278 43.2
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 5.6e-51 205.3 277 43.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 9.6e-51 204.5 282 45.0
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.2e-50 204.1 242 48.8
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 6.2e-50 201.8 263 46.8
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 6.2e-50 201.8 281 44.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.2e-48 197.6 273 44.3
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.5e-48 197.2 270 43.7
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-48 197.2 271 45.4
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 4.4e-48 195.7 278 42.8
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 9.9e-48 194.5 290 40.0
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 9.9e-48 194.5 240 45.8
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 3.8e-47 192.6 276 42.8
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.1e-46 191.0 277 43.0
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.1e-46 191.0 242 46.7
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.4e-46 190.7 278 42.8
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.4e-46 190.7 268 42.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.9e-46 190.3 249 48.2
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.4e-46 189.9 277 41.5
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 3.2e-46 189.5 264 42.0
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.2e-46 189.5 279 40.5
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 3.2e-46 189.5 283 40.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.2e-46 189.1 303 40.6
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.4e-46 188.7 242 46.3
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 9.3e-46 188.0 273 42.5
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.2e-45 187.6 261 42.1
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.1e-45 186.8 264 43.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.7e-45 186.4 275 41.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.5e-45 186.0 272 41.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.6e-45 185.7 236 47.9
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 6.0e-45 185.3 272 41.9
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 6.0e-45 185.3 279 40.1
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 7.8e-45 184.9 264 40.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.7e-44 183.7 277 41.5
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 3.9e-44 182.6 264 41.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 5.1e-44 182.2 277 39.4
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 5.1e-44 182.2 272 42.3
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 8.7e-44 181.4 275 41.5
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.3e-42 177.6 282 40.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.1e-42 176.8 280 38.9
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.1e-42 176.8 285 40.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.8e-42 176.4 278 39.9
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 2.8e-42 176.4 268 41.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 3.6e-42 176.0 268 41.4
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 3.6e-42 176.0 289 36.3
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.6e-42 176.0 269 39.8
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.8e-42 175.6 256 40.6
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.1e-42 174.9 184 51.6
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.1e-42 174.9 184 51.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 8.1e-42 174.9 245 44.1
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 8.1e-42 174.9 271 40.2
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 8.1e-42 174.9 265 41.5
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 8.1e-42 174.9 274 40.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.1e-41 174.5 170 52.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.1e-41 174.5 251 43.8
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.4e-41 174.1 270 38.1
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 4.0e-41 172.6 290 38.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 4.0e-41 172.6 276 40.9
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 5.8e-40 168.7 250 40.0
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.7e-39 167.2 205 45.4
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.9e-39 165.6 283 38.9
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.1e-38 164.5 278 38.5
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-38 164.1 250 39.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.4e-38 163.3 279 37.6
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.2e-38 162.9 263 38.4
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 7.1e-38 161.8 274 37.6
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 9.3e-38 161.4 274 38.0
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.2e-37 161.0 149 56.4
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.6e-37 160.6 274 37.2
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.6e-37 160.6 227 41.4
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.1e-37 160.2 276 37.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 3.5e-37 159.5 228 43.4
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.0e-36 157.9 263 37.6
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.8e-36 157.1 139 56.8
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 5.1e-36 155.6 266 38.7
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.9e-35 153.7 261 37.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-32 144.4 267 32.2
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.2e-32 144.4 279 36.2
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.3e-31 141.0 265 35.8
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.7e-31 140.6 289 31.1
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.1e-30 137.9 267 32.2
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.5e-30 136.7 277 35.7
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 4.2e-30 136.0 170 42.4
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 4.2e-30 136.0 221 38.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 4.2e-30 136.0 221 37.6
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 9.3e-30 134.8 170 41.2
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.3e-30 134.8 262 33.6
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.2e-29 134.4 246 35.4
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-29 134.0 265 34.0
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.7e-29 133.3 241 35.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.7e-29 133.3 170 41.8
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 7.9e-29 131.7 268 31.7
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.3e-28 130.2 282 35.5
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.1e-28 129.0 238 34.9
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 5.1e-28 129.0 209 37.3
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 7.4e-27 125.2 100 60.0
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 4.8e-26 122.5 267 31.8
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 5.3e-25 119.0 262 32.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 5.3e-25 119.0 262 32.8
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 6.9e-25 118.6 167 40.1
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.9e-25 118.6 95 60.0
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 3.4e-24 116.3 266 31.6
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 5.8e-24 115.5 263 32.7
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.7e-23 114.0 216 37.5
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 4.9e-23 112.5 171 36.8
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 6.5e-23 112.1 92 58.7
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 7.1e-22 108.6 147 41.5
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.6e-21 107.5 155 39.4
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 2.3e-20 103.6 196 37.8
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 4.3e-19 99.4 200 33.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 3.7e-18 96.3 176 33.5
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 8.2e-18 95.1 81 59.3
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.7e-15 87.4 201 28.9
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.9e-15 86.7 235 28.9
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 8.5e-15 85.1 70 58.6
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.2e-14 83.2 147 34.0
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 9.4e-14 81.6 127 39.4
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.2e-13 81.3 100 46.0
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.2e-13 81.3 171 34.5
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-13 80.1 159 32.7
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 6.1e-13 79.0 80 56.2
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.2e-08 64.7 55 56.4


User provided reference genes

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