Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 9.7e-263 909.8 537 100.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 6.8e-91 339.0 429 56.6
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.4e-88 331.3 550 48.0
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.7e-86 324.3 565 48.1
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.6e-84 316.6 559 47.6
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.3e-83 313.9 551 47.4
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-65 254.2 548 44.3
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 2.2e-65 254.2 548 44.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-64 251.1 533 43.9
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-64 251.1 533 43.9
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 2.4e-64 250.8 537 45.3
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 2.3e-62 244.2 512 44.3
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.6e-60 236.9 655 38.9
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 6.4e-57 226.1 601 39.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 8.4e-57 225.7 611 37.2
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.4e-56 224.2 616 39.9
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 6.0e-55 219.5 593 40.6
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.0e-54 218.8 631 35.7
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.5e-53 214.2 610 39.7
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 3.4e-50 203.8 697 33.7
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.8e-46 191.4 321 48.3
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.3e-45 187.2 701 31.7
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 4.3e-45 186.8 652 36.0
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 7.4e-45 186.0 656 34.8
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-44 185.3 638 33.9
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.7e-44 183.7 636 33.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 6.3e-44 183.0 411 41.1
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 6.3e-44 183.0 639 33.8
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 6.9e-43 179.5 701 30.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.9e-41 174.1 677 31.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.0e-38 164.1 270 47.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-36 157.9 203 55.7
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.9e-32 144.8 599 31.4
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-29 135.2 190 51.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.5e-29 135.2 190 51.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 9.1e-27 125.9 629 29.1
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.7e-25 121.7 293 37.9
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.7e-25 121.7 293 37.9
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.2e-25 121.3 310 36.5
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.9e-25 120.9 301 37.9
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.0e-25 120.2 286 37.1
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 5.0e-25 120.2 439 33.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.2e-24 117.5 312 36.5
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 5.5e-24 116.7 281 36.7
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 6.1e-23 113.2 252 39.3
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 7.9e-23 112.8 253 36.0
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 7.9e-23 112.8 301 38.5
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.8e-22 111.7 253 37.5
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.0e-22 110.9 292 35.3
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 6.7e-22 109.8 422 33.4
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.1e-21 109.0 432 33.6
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.5e-21 108.6 296 35.5
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.0e-21 108.2 348 31.3
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 3.3e-21 107.5 433 31.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.2e-20 104.8 446 30.5
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.8e-20 103.6 449 30.3
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.3e-20 103.2 461 30.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 4.1e-19 100.5 279 38.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.6e-18 98.6 405 29.1
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.6e-18 97.8 256 38.3
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 2.6e-18 97.8 210 40.0
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 3.5e-18 97.4 436 29.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.5e-18 97.4 629 27.3
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 5.9e-18 96.7 261 34.1
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.7e-18 96.3 270 34.4
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.7e-17 95.1 351 33.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.2e-17 94.7 509 26.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.2e-17 94.7 292 35.3
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.9e-17 94.4 132 46.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.9e-17 94.4 449 29.2
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.5e-17 93.2 275 34.5
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 6.5e-17 93.2 223 37.7
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 8.5e-17 92.8 444 28.2
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.1e-16 92.4 457 29.8
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.1e-16 92.4 356 30.6
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.9e-16 91.7 516 27.5
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.9e-16 91.7 313 33.9
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 3.2e-16 90.9 286 33.2
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 4.2e-16 90.5 444 27.7
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 9.4e-16 89.4 229 34.1
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 9.4e-16 89.4 214 40.7
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 9.4e-16 89.4 414 30.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 9.4e-16 89.4 260 35.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.2e-15 89.0 446 28.3
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.1e-15 86.7 347 31.1
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 6.1e-15 86.7 201 32.3
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 3.0e-14 84.3 309 33.3
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 5.2e-14 83.6 446 28.3
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 6.7e-14 83.2 532 25.6
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 8.8e-14 82.8 347 30.5
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.2e-13 82.4 238 33.6
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.3e-13 80.9 418 26.3
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 9.7e-13 79.3 431 27.8
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.3e-12 79.0 155 38.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.7e-12 78.6 254 32.7
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.2e-12 78.2 429 29.1
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 4.8e-12 77.0 562 25.6
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 6.3e-12 76.6 278 31.3
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.3e-12 76.6 425 27.3
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 6.3e-12 76.6 305 31.1
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.6e-10 72.0 324 32.1
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.6e-10 72.0 284 28.2
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 2.7e-10 71.2 236 33.5
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.5e-10 70.9 565 24.2
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 4.5e-10 70.5 340 28.8
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.9e-10 70.1 223 33.2
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.0e-09 69.3 453 28.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.3e-09 68.9 178 37.6
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 2.9e-09 67.8 69 53.6
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 3.8e-09 67.4 291 29.9
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 5.0e-09 67.0 177 32.2
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 6.5e-09 66.6 428 25.7
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 8.5e-09 66.2 297 27.9
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.1e-08 65.9 308 29.2
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.5e-08 65.5 342 26.9
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.5e-08 64.7 295 29.8
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.5e-08 64.7 488 26.8
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 3.2e-08 64.3 244 29.9
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.2e-08 63.9 64 54.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 4.2e-08 63.9 238 29.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 5.5e-08 63.5 188 33.0
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 5.5e-08 63.5 427 26.0
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 9.4e-08 62.8 255 31.0
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.2e-07 62.4 384 27.9
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.1e-07 61.6 39 74.4
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 2.1e-07 61.6 103 43.7
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.7e-07 61.2 45 62.2
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.7e-07 61.2 456 26.3
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 3.6e-07 60.8 98 45.9
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 3.6e-07 60.8 98 45.9
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.7e-07 60.5 457 26.5
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 1.0e-06 59.3 165 35.8
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.0e-06 57.8 425 25.2
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 5.2e-06 57.0 38 65.8
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 5.2e-06 57.0 38 65.8
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 6.8e-06 56.6 170 34.1


User provided reference genes

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