Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.9e-163 579.3 346 100.0
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 4.8e-146 521.5 349 90.5
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.0e-143 513.8 349 90.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.3e-143 513.5 349 83.7
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 6.5e-143 511.1 349 85.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.9e-142 509.6 349 87.4
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 2.5e-142 509.2 350 90.0
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 7.9e-141 504.2 350 87.4
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.0e-140 503.8 349 85.7
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 8.2e-138 494.2 346 82.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.9e-134 483.0 350 78.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 6.1e-125 451.4 349 77.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.8e-124 449.9 349 66.8
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.5e-123 446.8 349 69.6
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.3e-122 443.7 344 69.5
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 6.3e-122 441.4 349 66.5
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 8.2e-122 441.0 346 67.6
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 8.2e-122 441.0 349 64.8
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-121 440.3 349 67.6
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.1e-121 439.1 349 67.6
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 4.1e-121 438.7 344 65.7
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 9.1e-121 437.6 351 70.9
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.2e-120 437.2 343 73.2
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.5e-120 435.3 344 63.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 5.9e-120 434.9 355 63.4
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 7.7e-120 434.5 350 65.4
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.0e-119 434.1 344 64.5
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.3e-119 433.7 344 64.5
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.7e-119 433.3 346 74.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.2e-119 433.0 349 65.6
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.9e-119 432.6 346 65.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.9e-119 432.6 349 66.8
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.8e-119 432.2 347 66.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.0e-119 431.8 344 61.6
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 8.5e-119 431.0 349 66.8
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.4e-118 430.3 348 73.0
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 3.2e-118 429.1 346 61.3
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 3.2e-118 429.1 349 63.9
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.5e-118 428.3 347 63.4
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 7.2e-118 427.9 344 62.8
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.6e-117 426.8 349 61.9
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 2.7e-117 426.0 303 85.8
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 6.1e-117 424.9 350 60.3
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 6.1e-117 424.9 341 73.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.0e-117 424.5 360 60.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.0e-116 424.1 342 64.0
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 5.2e-116 421.8 347 64.8
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 6.7e-116 421.4 343 71.1
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.1e-115 420.6 340 62.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.3e-115 419.1 349 62.8
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 5.7e-115 418.3 343 60.9
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 7.4e-115 417.9 349 64.8
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.3e-114 417.2 345 66.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.3e-114 417.2 347 64.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.2e-114 416.4 348 61.2
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.7e-114 415.6 351 74.1
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.7e-114 415.6 345 62.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.8e-114 415.2 346 67.9
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.3e-114 414.8 346 65.0
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.3e-114 414.8 343 63.3
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 8.2e-114 414.5 347 59.9
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.1e-113 414.1 342 65.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.1e-113 414.1 346 59.5
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.4e-113 413.7 342 62.6
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.8e-113 413.3 345 63.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.4e-113 412.9 346 66.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 7.0e-113 411.4 342 61.7
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 9.1e-113 411.0 341 65.1
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.2e-112 410.6 343 66.2
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.6e-112 410.2 343 65.3
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.0e-112 409.8 351 72.1
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.0e-112 409.8 343 65.9
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.6e-112 409.5 349 59.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.0e-111 407.5 343 62.4
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.0e-111 407.5 346 64.7
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-111 407.1 346 64.5
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.9e-111 406.0 343 62.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.8e-111 405.6 326 78.2
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 5.0e-111 405.2 351 60.4
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 5.0e-111 405.2 368 57.6
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 6.5e-111 404.8 347 61.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.5e-110 403.7 342 59.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.5e-110 403.7 348 60.3
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.9e-110 403.3 343 70.3
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.2e-110 402.5 348 61.5
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.2e-110 402.1 345 62.0
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 5.5e-110 401.7 346 63.6
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 7.2e-110 401.4 346 64.2
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 9.4e-110 401.0 342 62.0
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.7e-109 399.4 345 63.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.6e-109 399.1 351 60.1
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.6e-109 399.1 351 60.1
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.6e-109 399.1 346 63.3
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.1e-109 398.3 342 60.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.0e-109 397.9 341 64.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 8.0e-109 397.9 345 63.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.0e-108 397.5 345 57.7
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.4e-108 397.1 347 61.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.0e-108 396.0 347 63.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.0e-108 395.6 346 61.0
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 5.2e-108 395.2 347 67.4
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.5e-107 391.3 344 58.7
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.5e-107 391.3 348 60.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.3e-106 390.6 344 65.1
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 6.3e-106 388.3 348 62.1
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 2.4e-105 386.3 344 60.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.7e-104 382.9 350 58.9
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 3.5e-104 382.5 342 56.7
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 5.9e-104 381.7 292 81.5
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 5.9e-104 381.7 449 49.0
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-103 380.6 346 61.0
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.9e-103 379.4 327 59.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.0e-103 378.6 342 59.1
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.5e-103 378.3 345 54.8
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 8.5e-103 377.9 425 60.9
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.5e-102 376.3 342 56.4
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 3.6e-101 372.5 287 81.5
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 3.6e-101 372.5 347 54.2
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.2e-99 367.5 342 54.1
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.4e-99 365.5 356 68.0
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.7e-98 363.6 348 51.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.8e-97 360.1 310 60.6
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-97 359.8 349 52.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.2e-96 357.5 356 55.3
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 2.7e-96 356.3 344 50.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.9e-96 355.1 352 52.6
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.9e-94 350.1 342 53.5
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.2e-94 349.0 304 63.5
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 7.2e-94 348.2 349 50.4
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.0e-93 344.7 254 67.3
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 8.0e-93 344.7 344 51.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.0e-92 344.4 341 54.3
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 4.9e-90 335.5 344 55.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 6.3e-90 335.1 342 53.5
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.9e-86 323.6 294 62.6
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.9e-86 323.6 337 51.3
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.8e-84 317.0 292 59.9
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.3e-84 316.6 295 57.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.0e-84 316.2 245 79.6
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.9e-81 307.0 249 80.7
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.4e-81 306.6 346 49.1
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.2e-80 304.3 244 82.8
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.4e-73 280.0 172 78.5
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 3.2e-73 279.6 298 58.1
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 3.2e-73 279.6 345 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.6e-72 277.3 337 41.5
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.7e-69 265.8 339 38.9
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.0e-67 260.4 254 54.3
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 6.4e-66 255.4 277 52.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.6e-64 249.2 247 54.3
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.9e-63 246.1 238 56.3
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.5e-62 243.4 145 77.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 7.3e-62 241.9 338 43.2
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 9.5e-62 241.5 343 37.0
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.2e-61 241.1 246 57.3
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 5.2e-60 235.7 255 48.6
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 7.6e-59 231.9 239 53.6
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 2.2e-58 230.3 227 57.3
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.2e-58 230.3 254 48.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-57 227.3 130 79.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-47 194.9 281 38.4
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.9e-47 193.0 120 75.0
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.1e-47 192.6 256 42.2
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 2.2e-42 177.2 105 77.1
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 6.9e-28 129.0 102 62.7
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.0e-26 125.2 117 57.3
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.5e-22 111.3 72 70.8
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-22 110.9 90 63.3
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.7e-22 109.4 90 61.1
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.7e-21 106.7 63 69.8
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.5e-18 95.9 57 75.4
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.9e-17 94.4 54 68.5
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.8e-12 77.8 102 33.3
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.3e-10 71.6 45 77.8
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-09 67.4 133 34.6
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.6e-08 64.7 142 28.9
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 3.0e-07 60.5 165 24.8


User provided reference genes

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