Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.4e-75 286.2 141 100.0
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.9e-32 142.9 130 62.3
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.2e-32 142.1 132 64.4
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-30 137.1 130 61.5
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.0e-30 137.1 129 61.2
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 3.9e-30 135.2 136 59.6
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.8e-28 128.3 131 58.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.8e-28 128.3 131 58.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 8.2e-28 127.5 145 53.1
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-27 126.7 131 58.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-27 126.7 131 58.8
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 6.9e-27 124.4 131 58.0
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 9.1e-27 124.0 129 57.4
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 9.1e-27 124.0 138 53.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.0e-26 122.9 129 56.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.0e-26 122.9 131 57.3
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 2.6e-26 122.5 129 56.6
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.5e-26 121.7 127 58.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.5e-26 121.7 127 58.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.0e-25 120.6 141 52.5
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.3e-25 120.2 143 54.5
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.8e-25 118.6 127 56.7
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 6.5e-25 117.9 135 54.1
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.4e-24 116.7 140 50.7
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 1.4e-24 116.7 141 48.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.9e-24 116.3 129 52.7
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.9e-24 116.3 113 58.4
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.9e-24 116.3 139 46.0
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 2.5e-24 115.9 138 49.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.2e-24 115.2 139 47.5
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 4.2e-24 115.2 144 49.3
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 4.2e-24 115.2 132 50.8
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 5.5e-24 114.8 128 49.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.5e-24 114.8 107 55.1
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 5.5e-24 114.8 120 55.8
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 9.4e-24 114.0 134 50.7
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 9.4e-24 114.0 132 53.0
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.2e-23 113.6 129 52.7
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.2e-23 113.6 129 52.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.6e-23 112.1 126 50.8
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.1e-23 111.3 142 50.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.0e-22 110.5 125 52.8
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 3.0e-22 109.0 118 54.2
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.9e-22 108.6 135 49.6
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.9e-22 108.6 131 50.4
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 5.1e-22 108.2 150 46.0
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.5e-21 106.7 157 47.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.0e-21 106.3 150 47.3
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.0e-21 106.3 135 49.6
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.0e-21 106.3 111 55.9
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.0e-21 106.3 111 55.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.0e-21 106.3 139 47.5
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.0e-21 106.3 125 53.6
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.0e-21 106.3 148 47.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.6e-21 105.9 147 46.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.6e-21 105.9 116 52.6
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.3e-21 105.5 135 49.6
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.3e-21 105.5 118 51.7
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.4e-21 105.1 137 48.2
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 5.7e-21 104.8 116 52.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 5.7e-21 104.8 135 49.6
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 9.7e-21 104.0 127 49.6
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.7e-21 104.0 147 46.3
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 9.7e-21 104.0 152 46.1
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.3e-20 103.6 139 46.0
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.7e-20 103.2 137 48.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.8e-20 102.4 144 44.4
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.8e-20 102.4 127 49.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.8e-20 102.4 115 52.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 3.7e-20 102.1 112 53.6
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.8e-20 101.7 101 58.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.8e-20 101.7 119 50.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 4.8e-20 101.7 116 53.4
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 6.3e-20 101.3 111 49.5
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 6.3e-20 101.3 116 51.7
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.1e-19 100.5 147 44.9
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.1e-19 100.5 109 55.0
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.4e-19 100.1 110 51.8
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.4e-19 100.1 128 51.6
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.8e-19 99.8 149 45.6
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.8e-19 99.8 135 46.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.8e-19 99.8 146 45.9
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.4e-19 99.4 141 43.3
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.4e-19 99.4 124 48.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 2.4e-19 99.4 145 44.1
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 3.1e-19 99.0 110 51.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 3.1e-19 99.0 117 45.3
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 3.1e-19 99.0 117 45.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.1e-19 99.0 117 45.3
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.1e-19 98.6 107 51.4
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 6.9e-19 97.8 52 84.6
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 6.9e-19 97.8 110 49.1
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 9.1e-19 97.4 125 49.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-18 96.7 140 42.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.0e-18 96.3 116 50.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.6e-18 95.9 140 43.6
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.6e-18 95.9 140 46.4
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.4e-18 95.5 145 44.8
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.5e-18 95.1 147 42.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 5.9e-18 94.7 144 46.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 5.9e-18 94.7 145 44.8
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 7.7e-18 94.4 149 44.3
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 7.7e-18 94.4 150 46.0
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 7.7e-18 94.4 146 47.9
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.0e-17 94.0 137 45.3
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.3e-17 93.6 158 41.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.7e-17 93.2 142 41.5
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 2.2e-17 92.8 136 47.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.2e-17 92.8 142 41.5
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 8.5e-17 90.9 104 48.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 8.5e-17 90.9 125 47.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-16 90.1 127 48.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.9e-16 89.7 127 48.8
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.2e-16 89.0 124 48.4
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 5.5e-16 88.2 131 46.6
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.2e-15 87.0 108 44.4
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.6e-15 86.7 144 46.5
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.6e-15 86.7 130 46.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 2.7e-15 85.9 104 51.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.7e-15 85.9 101 50.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.6e-15 85.5 126 46.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.6e-15 85.5 132 43.2
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 6.1e-15 84.7 127 41.7
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.3e-14 82.8 78 53.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 3.9e-14 82.0 137 39.4
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.5e-13 80.1 119 43.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 5.7e-13 78.2 40 85.0
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.4e-13 77.8 135 41.5
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 7.4e-13 77.8 44 77.3
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 9.7e-13 77.4 156 37.8
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.3e-12 77.0 40 85.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.7e-12 76.6 153 37.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.7e-12 76.6 112 42.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 3.7e-12 75.5 40 85.0
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.8e-11 73.2 37 86.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.3e-11 71.6 40 80.0
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.2e-09 66.2 40 82.5
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 7.2e-08 61.2 111 39.6
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 2.1e-07 59.7 146 34.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 4.7e-07 58.5 27 88.9
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.0e-06 57.4 97 38.1


User provided reference genes

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