Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 7.5e-156 553.9 298 100.0
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 9.8e-148 526.9 297 94.6
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 2.4e-146 522.3 297 94.6
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 5.9e-145 517.7 297 92.9
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 1.0e-144 516.9 297 91.9
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 3.9e-144 515.0 297 92.3
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.5e-143 513.1 298 92.6
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.5e-143 513.1 297 91.6
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.9e-143 512.7 297 91.9
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.5e-143 512.3 298 91.6
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 7.3e-143 510.8 297 91.2
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.8e-141 506.1 298 90.9
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.5e-140 503.1 301 90.0
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.4e-138 495.7 298 88.9
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 8.1e-134 480.7 297 86.5
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 2.3e-125 452.6 299 81.6
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 8.9e-125 450.7 293 82.6
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.5e-124 449.9 299 80.9
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 2.0e-124 449.5 289 83.4
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 4.4e-124 448.4 294 79.9
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 4.4e-124 448.4 299 80.3
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 7.6e-124 447.6 288 81.9
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 3.7e-123 445.3 290 80.7
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.4e-123 444.1 299 79.6
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.4e-123 444.1 299 79.6
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.9e-122 443.0 299 79.9
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 2.4e-122 442.6 299 79.3
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 4.1e-122 441.8 290 79.7
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 5.4e-122 441.4 299 78.6
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.1e-121 439.5 280 83.2
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.3e-120 436.0 300 78.3
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.1e-120 434.9 300 78.0
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 5.1e-120 434.9 299 78.3
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.1e-119 433.7 299 76.9
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 3.3e-119 432.2 305 75.4
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.3e-119 431.8 283 80.2
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.2e-118 430.3 292 77.7
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 2.8e-118 429.1 302 77.8
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 8.1e-118 427.6 301 76.1
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.1e-117 427.2 301 77.1
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.1e-117 427.2 301 77.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.4e-117 426.0 286 78.7
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 4.0e-117 425.2 301 75.7
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 5.2e-117 424.9 301 75.7
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 1.2e-116 423.7 293 76.8
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 2.6e-116 422.5 301 78.1
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 5.8e-116 421.4 286 78.3
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 3.8e-115 418.7 298 75.2
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 3.8e-115 418.7 284 76.8
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 6.4e-115 417.9 291 75.6
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 6.4e-115 417.9 299 74.2
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.1e-114 417.2 286 76.6
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 1.4e-114 416.8 285 78.2
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 1.9e-114 416.4 285 78.2
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 1.9e-114 416.4 291 75.3
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.2e-114 415.2 265 82.6
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 5.4e-114 414.8 288 75.7
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.2e-113 413.7 282 77.3
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-113 413.7 266 82.0
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-113 413.7 282 78.7
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 2.1e-113 412.9 286 77.6
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 2.1e-113 412.9 297 74.7
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 4.6e-113 411.8 290 75.2
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 4.6e-113 411.8 290 75.2
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.0e-113 411.4 265 81.9
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 7.8e-113 411.0 294 74.5
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.7e-112 409.8 297 74.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.7e-112 409.8 285 78.2
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 2.3e-112 409.5 290 74.8
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 3.0e-112 409.1 278 77.7
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 3.9e-112 408.7 284 76.8
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 6.6e-112 407.9 281 76.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 6.6e-112 407.9 289 74.0
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.1e-111 407.1 283 78.1
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.1e-111 407.1 286 73.8
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.5e-111 406.0 300 74.7
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 3.3e-111 405.6 301 73.4
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 7.3e-111 404.4 301 73.8
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 9.6e-111 404.1 283 77.4
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 9.6e-111 404.1 283 77.7
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 9.6e-111 404.1 288 74.0
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 9.6e-111 404.1 289 76.5
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.3e-110 403.7 281 75.1
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 2.8e-110 402.5 276 76.1
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 3.1e-109 399.1 301 73.8
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 3.1e-109 399.1 281 74.0
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 5.3e-109 398.3 301 70.8
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 6.9e-109 397.9 293 75.1
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 9.0e-109 397.5 293 72.7
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 9.0e-109 397.5 282 76.2
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 1.2e-108 397.1 321 68.2
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.2e-108 397.1 294 74.1
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.5e-108 396.7 300 71.3
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 1.5e-108 396.7 276 75.4
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.5e-108 396.7 294 74.5
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 1.5e-108 396.7 281 73.7
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.6e-108 396.0 301 70.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 3.4e-108 395.6 281 74.4
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 5.8e-108 394.8 269 76.2
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 7.6e-108 394.4 324 67.6
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 3.8e-107 392.1 322 68.6
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 4.9e-107 391.7 329 65.7
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-106 390.6 266 79.7
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 9.3e-106 387.5 292 72.9
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 9.3e-106 387.5 292 72.9
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 9.3e-106 387.5 277 74.4
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 2.7e-105 386.0 277 74.0
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.9e-105 384.4 292 72.6
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-104 382.9 284 75.0
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 5.1e-104 381.7 281 71.5
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.1e-102 374.4 265 77.7
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.6e-100 369.4 278 69.8
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.7e-99 366.7 252 76.6
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.2e-99 366.3 275 69.1
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.4e-99 364.8 233 81.1
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.9e-98 363.2 286 67.1
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 2.7e-97 359.4 349 59.9
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 8.7e-96 354.4 299 66.6
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.5e-95 353.6 282 67.4
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 2.5e-95 352.8 305 63.6
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.6e-94 350.1 294 66.7
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.1e-93 347.4 297 66.7
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.8e-93 346.7 294 64.6
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 9.0e-93 344.4 297 66.0
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.2e-92 344.0 298 66.1
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.0e-91 340.9 289 62.3
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.1e-90 337.4 274 62.8
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 5.5e-90 335.1 212 83.0
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 4.3e-87 325.5 294 60.2
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 4.5e-84 315.5 293 62.5
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.0e-80 302.8 216 74.5
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 2.5e-79 299.7 284 54.9
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 6.9e-77 291.6 267 62.9
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.0e-75 287.7 298 57.0
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.6e-73 280.4 210 68.1
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 2.7e-73 279.6 281 52.3
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 8.5e-67 258.1 203 66.0
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 5.5e-66 255.4 198 72.2
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.1e-63 247.7 295 50.8
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 2.0e-63 246.9 163 76.1
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 2.6e-63 246.5 250 57.6
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.4e-53 214.2 244 46.3
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.0e-52 210.3 178 67.4
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.0e-52 210.3 178 67.4
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.7e-51 207.2 159 69.2
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 4.2e-50 202.6 169 72.2
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 1.3e-46 191.0 107 90.7
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 1.3e-46 191.0 107 90.7
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.7e-38 164.1 96 87.5
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 7.7e-36 155.2 149 63.1
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 7.8e-28 128.6 94 70.2
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.3e-27 127.1 81 82.7
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 3.7e-22 109.8 96 64.6
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.4e-21 107.8 85 64.7
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 9.5e-18 95.1 59 84.7
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 4.7e-17 92.8 63 73.0
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.8e-16 90.9 69 71.0
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 6.8e-16 89.0 69 71.0
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 2.6e-15 87.0 83 60.2
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 6.4e-14 82.4 77 57.1
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 8.3e-14 82.0 77 58.4
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.4e-13 81.3 52 84.6
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 7.8e-12 75.5 77 57.1
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.3e-11 74.7 82 48.8
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 3.0e-11 73.6 125 41.6
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 3.9e-11 73.2 82 50.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 3.3e-10 70.1 39 87.2
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 3.3e-10 70.1 39 87.2
BcaB01g01563 Brassica carinata HOM05D004217 ORTHO05D094843 2.1e-09 67.4 45 75.6
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.7e-09 66.2 63 61.9
BcaB01g01562 Brassica carinata HOM05D004217 ORTHO05D091974 8.1e-09 65.5 80 52.5
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 7.6e-07 58.9 93 38.7


User provided reference genes

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