Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 1.4e-156 556.2 275 100.0
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 8.6e-90 334.3 231 74.9
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 8.6e-90 334.3 230 74.3
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 8.9e-87 324.3 230 73.5
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.2e-86 323.9 230 73.5
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.1e-83 313.2 228 73.7
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 1.0e-82 310.8 230 71.3
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 1.0e-82 310.8 230 71.3
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 5.1e-82 308.5 231 70.6
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 1.9e-81 306.6 230 70.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 1.9e-81 306.6 230 70.9
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 2.3e-79 299.7 227 67.0
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 8.4e-77 291.2 204 71.1
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.1e-76 290.8 228 64.0
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 7.1e-76 288.1 230 63.9
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 7.1e-76 288.1 230 63.9
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 6.0e-75 285.0 204 68.6
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 7.8e-75 284.6 204 69.6
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.9e-74 282.3 204 67.6
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 6.6e-74 281.6 204 67.2
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.1e-73 280.8 240 60.0
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 1.9e-73 280.0 204 67.2
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 3.3e-73 279.3 232 60.8
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 5.6e-73 278.5 229 63.3
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 9.6e-73 277.7 204 67.6
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.8e-72 276.2 232 62.9
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.8e-72 276.2 204 66.7
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 4.7e-72 275.4 230 61.7
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 4.7e-72 275.4 228 61.4
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 6.2e-72 275.0 230 62.2
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.8e-71 273.5 204 65.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 6.8e-71 271.6 204 66.2
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.5e-70 270.4 232 62.1
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 2.0e-70 270.0 195 68.7
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.6e-70 269.6 223 58.7
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 4.4e-70 268.9 227 60.4
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 5.8e-70 268.5 222 62.2
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 7.6e-70 268.1 229 61.1
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 9.9e-70 267.7 206 66.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 9.9e-70 267.7 224 58.9
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.3e-69 267.3 208 64.9
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.2e-69 266.5 230 57.8
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 2.2e-69 266.5 220 60.9
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.9e-69 266.2 207 61.8
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 4.9e-69 265.4 220 60.5
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.4e-68 263.8 192 68.2
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.4e-68 263.8 228 58.8
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.2e-68 262.7 192 67.7
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 9.3e-68 261.2 195 65.6
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.2e-67 260.8 192 67.2
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.6e-67 260.4 229 58.1
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.6e-67 260.4 195 65.6
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 2.1e-67 260.0 239 57.3
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.5e-67 259.2 205 63.4
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 6.0e-67 258.5 229 59.0
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.0e-66 257.7 192 66.7
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.0e-66 257.7 224 59.8
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 5.1e-66 255.4 192 65.1
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 6.6e-66 255.0 234 58.5
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 6.6e-66 255.0 195 64.1
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.5e-65 253.8 232 56.9
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.9e-65 253.4 222 57.7
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.9e-65 253.4 192 63.0
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 9.6e-65 251.1 226 56.6
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.3e-64 250.8 206 61.7
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.3e-64 250.8 205 60.0
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.6e-64 250.4 191 63.4
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.6e-64 249.2 232 56.5
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 6.2e-64 248.4 192 62.0
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 2.4e-63 246.5 193 62.7
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 5.3e-63 245.4 201 59.7
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.2e-62 244.2 232 55.6
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.2e-62 244.2 214 59.8
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.2e-62 244.2 192 62.5
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.2e-61 240.0 192 60.4
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 4.9e-61 238.8 213 57.7
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 3.2e-60 236.1 194 60.8
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.1e-59 233.4 219 57.5
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 2.7e-59 233.0 161 68.9
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 2.3e-58 229.9 158 70.9
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 5.6e-57 225.3 220 55.9
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.3e-56 224.2 158 79.1
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 3.6e-56 222.6 158 69.0
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.5e-54 217.2 196 61.2
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 5.8e-54 215.3 194 55.7
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 4.9e-53 212.2 192 54.7
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 8.4e-53 211.5 227 51.1
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.1e-52 211.1 169 64.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.1e-52 211.1 191 56.0
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.2e-52 209.1 189 54.5
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.2e-51 207.6 234 48.3
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 7.9e-51 204.9 188 53.2
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.9e-50 202.6 188 52.7
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 6.2e-48 195.3 164 61.6
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.7e-45 187.2 169 55.6
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 6.5e-45 185.3 181 51.9
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 6.0e-43 178.7 245 47.3
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 5.1e-42 175.6 154 61.0
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 2.0e-38 163.7 120 69.2
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.0e-37 161.4 181 48.1
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.3e-37 161.0 140 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 5.1e-34 149.1 135 54.1
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 5.7e-33 145.6 187 44.4
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 9.7e-33 144.8 209 42.1
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.8e-31 140.6 244 36.5
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 5.9e-30 135.6 103 64.1
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.7e-29 134.0 103 63.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 7.2e-28 128.6 106 71.7
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 1.8e-23 114.0 190 38.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 6.9e-23 112.1 74 68.9
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 4.2e-20 102.8 76 68.4
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 9.4e-20 101.7 104 51.9
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 2.3e-18 97.1 78 65.4
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 8.8e-18 95.1 88 56.8
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.5e-14 83.2 78 52.6
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.1e-09 68.2 196 28.6
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 1.3e-08 64.7 210 28.6
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.3e-08 64.7 224 27.7
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.2e-08 63.9 33 78.8
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 2.2e-08 63.9 195 26.2
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 2.8e-08 63.5 176 28.4
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 4.8e-08 62.8 195 27.2
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 6.3e-08 62.4 206 24.3
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 8.2e-08 62.0 195 26.7
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 1.8e-07 60.8 197 23.9
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 1.8e-07 60.8 204 27.5
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 2.4e-07 60.5 180 27.2
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 3.1e-07 60.1 202 25.2
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 7.0e-07 58.9 32 78.1
Cre17.g713800 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.6e-06 57.8 224 26.3
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.7e-06 57.0 54 51.9
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 4.5e-06 56.2 199 26.6
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 5.9e-06 55.8 173 24.9


User provided reference genes

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