Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 0.0e+00 2671.0 1388 100.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 0.0e+00 1666.4 1439 66.9
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 0.0e+00 1646.3 1457 66.2
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 0.0e+00 1645.2 1457 66.2
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 0.0e+00 1644.0 1439 66.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 0.0e+00 1607.4 1464 65.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1602.0 1505 63.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 0.0e+00 1564.7 1468 63.6
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 1473.0 1444 61.3
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1472.2 1433 62.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1471.4 1436 61.9
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1469.5 1441 61.3
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1442.6 1444 59.9
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1406.7 1426 60.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 0.0e+00 1404.0 1423 60.2
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 0.0e+00 1400.2 1432 60.4
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 0.0e+00 1388.6 1429 59.0
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1246.1 1403 56.3
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1205.3 1490 52.8
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 0.0e+00 1187.6 1390 53.9
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 0.0e+00 1154.0 1482 52.2
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 4.6e-200 703.0 1586 38.0
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 4.1e-196 689.9 1602 38.5
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 9.1e-196 688.7 1598 38.4
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 4.2e-193 679.9 1471 38.8
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 9.4e-193 678.7 1599 38.0
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 5.1e-191 672.9 1670 35.7
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 1.0e-183 648.7 1627 36.4
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.8e-183 647.9 1619 36.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 4.8e-181 639.8 1565 36.6
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.2e-179 635.2 1561 36.3
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 8.5e-178 629.0 1590 35.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.5e-177 628.2 1631 35.1
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.8e-175 619.0 1607 35.8
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.7e-173 614.8 1624 35.6
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.8e-172 611.3 1595 35.7
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.8e-172 611.3 1614 36.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.7e-170 604.7 1573 35.2
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.7e-170 604.7 1632 35.2
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.2e-170 604.4 1566 36.4
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 5.0e-170 603.2 1549 34.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 4.2e-169 600.1 1685 34.1
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.6e-168 597.0 1586 35.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 3.4e-166 590.5 1626 35.7
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 7.5e-166 589.3 1655 34.9
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 3.7e-165 587.0 1585 34.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.5e-161 575.1 1634 33.4
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.9e-161 574.7 1327 37.3
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 3.3e-161 573.9 1690 34.0
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.0e-159 568.9 1611 34.8
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 5.2e-159 566.6 1609 35.1
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.5e-158 565.1 1600 35.2
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.3e-157 562.0 1561 34.8
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 2.3e-154 551.2 1604 34.4
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.5e-153 547.7 1594 34.9
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 4.3e-153 547.0 1550 34.1
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 4.9e-149 533.5 1550 34.0
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 6.4e-149 533.1 1570 34.0
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 1.4e-148 531.9 1488 34.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.9e-148 531.6 1592 34.3
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.9e-148 531.6 1516 33.8
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 4.1e-148 530.4 1589 33.5
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.1e-148 530.4 1578 33.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.0e-147 528.1 1499 34.4
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 2.7e-147 527.7 1569 34.2
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.0e-146 525.8 1608 34.0
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.6e-146 523.1 1603 34.1
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 8.6e-146 522.7 1575 34.3
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.2e-143 513.5 1533 32.9
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.8e-143 513.1 1611 32.9
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.5e-142 511.9 1582 32.4
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 2.0e-142 511.5 1604 33.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.7e-141 508.4 1641 32.6
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.9e-141 507.7 1569 32.6
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.4e-140 504.6 1590 33.0
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 3.2e-140 504.2 1591 32.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 6.6e-138 496.5 1499 34.1
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.1e-137 495.7 1642 31.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.4e-134 483.8 1549 32.7
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 8.4e-133 479.6 1531 32.5
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 5.1e-130 470.3 1608 32.5
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.1e-129 469.2 1612 31.3
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.9e-129 468.4 1605 31.3
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.9e-129 468.4 1568 32.5
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.5e-129 468.0 1606 31.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 3.6e-128 464.2 1295 33.1
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.4e-127 462.2 1577 32.5
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 4.0e-127 460.7 1636 31.2
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 3.4e-126 457.6 1414 32.8
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 4.4e-126 457.2 1505 34.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 5.4e-124 450.3 1597 31.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 6.0e-123 446.8 1658 30.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.0e-122 446.0 1599 31.9
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.9e-121 441.8 1488 32.1
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.2e-118 432.6 1499 30.5
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.3e-114 419.1 1579 30.8
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.8e-114 418.7 1634 29.9
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 8.1e-112 409.8 1467 30.9
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.4e-111 408.3 1426 31.1
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 4.5e-110 404.1 1678 29.5
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.9e-109 400.6 1601 29.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 8.4e-109 399.8 1425 30.6
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.6e-107 395.6 1714 29.8
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.3e-106 392.5 637 42.5
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 3.0e-106 391.3 1683 29.7
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 8.7e-106 389.8 1690 29.5
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 4.3e-105 387.5 1530 30.5
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.3e-104 386.0 1527 30.8
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.1e-103 382.9 1652 30.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 4.5e-102 377.5 1517 29.9
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 3.1e-95 354.8 1504 29.9
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.2e-93 348.6 1187 31.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 8.5e-93 346.7 776 36.2
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.7e-91 341.7 1544 29.0
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.3e-90 339.3 1531 30.0
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.2e-85 322.0 1479 29.6
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-83 315.8 342 56.1
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.4e-73 280.4 901 32.5
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.3e-72 279.6 1334 28.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 3.7e-72 278.1 1636 27.9
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 5.5e-68 264.2 193 75.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.6e-62 246.1 1599 27.1
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 7.7e-62 243.8 1546 28.0
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-60 240.0 203 66.5
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 8.0e-59 233.8 202 62.9
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.3e-58 232.3 1403 27.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.7e-54 218.8 1354 27.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 7.7e-54 217.2 1237 29.2
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.1e-52 213.4 672 32.7
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.1e-51 209.1 448 39.1
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.8e-49 200.3 1290 28.1
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.8e-47 196.1 1326 26.0
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.1e-47 194.9 218 57.3
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.5e-44 185.7 1474 26.0
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.4e-42 179.9 1189 27.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 2.0e-41 176.0 1428 26.7
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.0e-30 139.4 1232 26.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.9e-29 135.2 505 30.5
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-26 126.3 403 33.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.9e-26 124.0 328 36.6
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-25 123.6 682 27.3
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.1e-23 117.1 199 46.7
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 1.1e-23 117.1 199 46.7
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.4e-23 116.7 88 70.5
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.0e-21 110.5 459 32.0
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.9e-21 108.6 298 37.9
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-19 102.8 234 39.3
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 6.2e-19 101.3 1519 24.2
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.5e-17 96.7 498 30.5
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 2.0e-17 96.3 773 25.7
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.0e-13 82.4 1323 23.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 7.3e-12 77.8 473 29.6
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 7.3e-12 77.8 175 33.7
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.6e-09 67.8 341 28.4
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.4e-07 63.5 202 27.7
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.2e-07 62.0 149 32.2
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 2.1e-06 59.7 108 43.5
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.6e-06 58.5 121 35.5
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.8e-06 57.8 140 33.6


User provided reference genes

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