Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 2.5e-303 1044.6 532 100.0
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.5e-252 874.4 532 82.9
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.6e-249 865.9 532 83.1
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.1e-249 865.5 532 81.8
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.0e-248 863.2 532 82.5
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 6.7e-248 860.5 527 82.9
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 8.7e-240 833.6 532 79.9
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 5.3e-221 771.2 534 76.2
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.5e-218 763.1 534 75.5
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 5.5e-218 761.1 534 75.3
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 2.2e-214 749.2 532 73.9
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.8e-208 729.6 534 72.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.6e-207 725.7 535 69.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 8.3e-198 694.1 534 65.7
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.2e-196 690.3 536 65.7
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 7.7e-196 687.6 540 66.1
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 2.3e-195 686.0 535 64.9
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 5.0e-195 684.9 535 64.9
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 6.6e-195 684.5 529 65.6
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 6.6e-195 684.5 529 65.6
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.5e-194 682.6 531 65.0
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 4.2e-194 681.8 525 65.1
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 2.1e-193 679.5 541 64.3
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.8e-193 679.1 535 64.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.6e-193 678.7 531 65.0
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 5.2e-192 674.9 538 64.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 6.8e-192 674.5 528 64.2
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 4.4e-191 671.8 550 63.1
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 5.7e-191 671.4 537 62.6
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 6.3e-190 667.9 540 62.4
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.1e-189 667.2 537 63.1
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.4e-189 666.0 535 62.2
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 2.4e-189 666.0 541 63.0
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.1e-189 665.2 541 63.0
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 9.2e-189 664.1 533 64.4
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.6e-188 663.3 540 63.9
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.0e-188 662.9 528 63.1
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.7e-188 662.5 531 63.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.5e-188 662.1 527 62.6
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.9e-188 661.4 524 64.1
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.5e-186 656.8 533 62.3
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.9e-186 656.4 527 62.8
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.2e-185 653.7 560 60.9
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 2.1e-185 652.9 543 61.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.6e-185 652.1 532 61.3
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.4e-184 650.2 558 60.2
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.8e-184 649.8 532 61.7
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 3.1e-184 649.0 530 61.1
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 5.2e-184 648.3 521 62.6
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 5.2e-184 648.3 551 60.8
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 6.8e-184 647.9 534 61.6
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 5.8e-183 644.8 524 62.0
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 9.8e-183 644.0 523 63.3
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.9e-182 642.5 530 61.3
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 3.7e-182 642.1 538 60.6
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 3.7e-182 642.1 531 61.2
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.7e-180 636.0 534 58.6
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 3.5e-180 635.6 534 60.5
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 5.0e-179 631.7 526 59.3
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 6.6e-179 631.3 524 61.8
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.1e-178 630.6 530 60.2
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.1e-178 630.6 525 60.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.5e-178 629.4 521 61.0
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 4.3e-178 628.6 532 60.3
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 7.3e-178 627.9 530 60.6
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 2.6e-175 619.4 585 55.6
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 3.4e-175 619.0 528 60.6
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.7e-174 616.7 529 59.7
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-173 613.6 575 56.7
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.6e-172 608.6 529 60.1
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 4.6e-172 608.6 532 58.1
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 6.0e-172 608.2 536 58.6
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 5.1e-171 605.1 553 57.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 6.2e-169 598.2 533 59.5
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 6.8e-168 594.7 534 56.7
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 7.6e-167 591.3 453 66.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 7.8e-164 581.3 534 54.3
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 8.6e-163 577.8 496 60.3
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.1e-161 573.2 550 56.0
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 6.2e-161 571.6 543 56.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 2.4e-160 569.7 533 56.8
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 5.2e-160 568.5 586 53.1
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.2e-158 563.1 468 62.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 6.0e-156 555.1 499 57.1
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 6.6e-155 551.6 548 53.3
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.4e-151 538.9 548 52.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 9.0e-144 514.6 534 51.5
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 2.6e-143 513.1 437 58.8
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.4e-136 490.0 534 49.8
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.5e-134 481.9 413 60.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.5e-132 476.1 400 61.8
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 8.2e-129 464.9 405 58.5
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.9e-126 456.4 572 48.4
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-125 454.5 540 46.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 6.7e-123 445.3 546 45.2
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.9e-122 443.7 521 45.9
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.4e-104 384.4 498 45.4
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 7.2e-101 372.1 355 54.1
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 2.7e-100 370.2 355 53.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.8e-99 367.5 552 39.1
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 6.3e-97 359.0 550 39.1
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 7.0e-96 355.5 288 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 4.0e-91 339.7 470 41.1
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.7e-87 327.0 287 58.5
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 9.5e-77 292.0 312 52.2
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 3.4e-74 283.5 560 33.4
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 5.9e-71 272.7 378 41.8
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.3e-70 270.8 204 67.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.6e-70 269.2 577 33.4
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.3e-57 225.7 212 56.6
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 3.3e-53 213.8 546 29.1
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.6e-53 213.0 151 68.9
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 3.1e-51 207.2 166 64.5
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 7.3e-45 186.0 169 51.5
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 5.2e-43 179.9 135 64.4
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.2e-42 178.7 130 65.4
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 3.9e-38 163.7 134 64.9
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 3.3e-37 160.6 123 60.2
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.3e-36 158.7 99 80.8
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.5e-29 135.2 113 57.5
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.2e-28 129.8 99 64.6
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.4e-25 119.8 431 27.4
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.2e-23 115.5 85 64.7
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 4.3e-21 107.1 100 60.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.4e-19 101.3 71 73.2
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.3e-19 100.1 87 62.1
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.3e-19 100.1 87 62.1
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 6.5e-17 93.2 149 37.6
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.8e-14 85.1 125 39.2
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 3.0e-14 84.3 87 57.5
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 2.2e-09 68.2 112 42.0
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.2e-09 68.2 68 48.5
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.9e-08 65.1 114 37.7
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 5.5e-08 63.5 49 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 9.3e-08 62.8 296 25.0
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 8.7e-06 56.2 258 27.5


User provided reference genes

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