Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 4.1e-198 694.5 344 100.0
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 7.5e-168 594.0 348 83.9
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 7.5e-168 594.0 348 83.9
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.6e-165 584.7 348 83.0
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.8e-161 572.8 339 82.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.1e-158 563.5 339 82.0
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.4e-158 562.4 343 80.2
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.4e-153 546.6 343 79.9
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.4e-152 542.0 348 77.9
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 9.3e-150 533.9 346 78.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.7e-149 532.3 346 77.7
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 4.6e-149 531.6 346 77.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.0e-148 530.4 347 76.7
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.1e-147 526.9 347 75.8
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.9e-142 509.6 340 71.2
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 7.1e-142 507.7 336 72.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.1e-141 506.1 340 70.6
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 7.3e-139 497.7 345 69.9
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 8.1e-138 494.2 315 74.3
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 7.6e-136 487.6 318 73.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 9.9e-136 487.3 319 72.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.3e-135 486.9 336 70.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.2e-135 486.1 330 70.9
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.2e-135 486.1 333 71.5
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.8e-135 485.3 324 71.3
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-134 483.8 336 70.5
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 5.4e-134 481.5 270 85.2
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.2e-133 480.3 336 70.2
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.1e-133 479.6 333 68.5
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-133 478.4 326 69.0
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 6.0e-133 478.0 346 67.3
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.3e-132 476.1 323 70.6
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 8.7e-132 474.2 326 68.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.1e-131 473.8 386 63.5
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-131 473.0 319 69.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.5e-131 472.6 326 68.1
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.3e-131 471.9 334 68.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 5.6e-131 471.5 335 67.2
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.8e-130 469.2 341 67.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 4.8e-130 468.4 333 66.7
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.1e-129 465.7 332 67.2
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.3e-129 464.9 323 69.3
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 6.9e-129 464.5 343 65.9
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.9e-129 464.5 382 61.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 9.0e-129 464.2 340 66.8
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.6e-128 462.6 307 69.4
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.6e-128 462.6 334 66.8
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 7.6e-128 461.1 333 66.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.7e-127 459.9 376 62.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.7e-127 459.9 318 70.1
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 3.8e-127 458.8 342 65.5
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.8e-127 458.8 342 65.5
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.8e-127 458.8 336 66.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.9e-127 458.4 315 67.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 8.4e-127 457.6 332 68.1
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.4e-126 456.8 308 70.1
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 2.5e-126 456.1 337 67.1
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.2e-126 455.7 344 65.7
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.2e-126 455.3 332 68.1
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 5.5e-126 454.9 376 62.2
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.5e-126 454.9 332 67.8
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.2e-125 453.8 343 65.6
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.6e-125 453.4 335 65.7
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.0e-124 450.7 338 67.2
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.7e-122 442.2 312 68.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.7e-122 442.2 322 68.0
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 4.8e-122 441.8 295 71.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 4.8e-122 441.8 323 65.9
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.2e-122 441.0 345 63.5
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.2e-122 441.0 345 63.5
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.4e-121 440.3 312 66.7
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 5.8e-120 434.9 313 67.7
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.7e-119 433.3 344 63.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 8.4e-119 431.0 338 64.2
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.4e-118 430.3 306 67.3
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.2e-117 427.2 338 63.3
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.6e-117 426.8 339 61.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.6e-117 426.8 339 63.4
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.7e-117 426.0 290 69.3
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.1e-115 420.6 307 65.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.2e-114 416.4 339 61.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.8e-114 416.0 278 72.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 8.2e-114 414.5 306 66.3
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.9e-113 411.4 322 61.8
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 9.0e-113 411.0 362 58.0
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.3e-111 407.1 270 73.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.1e-110 404.1 323 61.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.1e-110 404.1 313 63.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.6e-109 400.2 270 70.4
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 4.6e-109 398.7 345 58.8
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.8e-108 396.7 263 71.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 4.3e-107 392.1 312 60.9
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.4e-105 386.3 294 63.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.0e-103 380.9 334 59.3
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.7e-103 380.2 250 71.6
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.5e-102 376.3 252 72.2
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.1e-101 373.2 342 54.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.0e-100 370.9 311 55.3
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.6e-99 366.3 322 57.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 3.3e-99 365.9 214 78.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.3e-99 365.9 325 56.6
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.7e-98 362.5 314 60.5
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 6.3e-98 361.7 344 53.2
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 7.0e-97 358.2 296 60.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 5.9e-96 355.1 334 54.5
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-94 350.1 314 60.5
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.9e-94 350.1 316 58.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 5.5e-94 348.6 411 47.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.2e-93 347.4 336 58.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-93 346.7 314 59.2
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.7e-93 346.3 308 58.4
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.0e-92 342.8 326 55.2
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.1e-91 340.9 266 62.0
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.7e-91 338.6 245 65.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.3e-90 335.1 316 57.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.3e-89 332.0 333 54.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.0e-88 330.1 319 54.5
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.7e-87 327.0 351 53.0
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 8.8e-84 314.7 404 44.6
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.0e-83 313.5 282 57.1
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.8e-82 308.9 250 61.2
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.4e-81 307.4 310 52.9
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.5e-78 296.6 275 55.3
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 9.8e-67 258.1 302 46.4
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.2e-66 256.9 307 43.0
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.4e-65 253.4 320 44.7
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.7e-63 247.3 306 42.2
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.2e-61 238.8 305 42.6
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.7e-58 229.6 241 52.3
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.4e-57 227.6 138 74.6
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 4.1e-57 226.1 152 69.1
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.2e-53 214.5 113 85.8
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.1e-53 213.8 254 45.3
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.2e-50 203.8 153 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.4e-50 202.2 252 41.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.3e-50 201.8 160 56.2
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.0e-47 194.9 204 46.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.1e-46 191.4 317 38.5
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.6e-45 187.6 304 37.2
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 4.1e-41 172.9 241 41.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 3.0e-39 166.8 224 42.4
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.4e-36 157.9 101 71.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 3.5e-32 143.3 251 32.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.3e-30 136.3 278 33.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.4e-28 130.6 222 34.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.5e-27 127.9 393 26.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.5e-27 126.3 254 30.7
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.9e-25 120.9 94 64.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.1e-24 117.5 119 43.7
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 6.6e-23 112.5 104 44.2
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.9e-22 110.9 159 40.3
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 9.6e-22 108.6 73 68.5
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 9.6e-22 108.6 73 68.5
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.1e-21 107.5 144 37.5
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-21 107.5 73 67.1
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.8e-21 107.1 113 48.7
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.4e-20 104.8 303 29.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 9.0e-20 102.1 212 33.5
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.0e-19 100.9 292 26.4
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 6.4e-18 95.9 262 29.8
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 3.5e-16 90.1 60 70.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.1e-12 78.6 80 47.5
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.4e-09 68.2 98 41.8


User provided reference genes

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