Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.8e-111 404.8 202 100.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-82 309.3 207 75.8
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-82 308.9 207 75.4
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 6.3e-82 307.8 207 75.4
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 6.3e-82 307.8 207 75.4
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.3e-79 299.3 221 70.6
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 5.0e-79 298.1 204 74.5
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.5e-78 295.8 202 75.2
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.5e-78 294.7 208 73.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-77 293.5 207 73.4
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.2e-77 293.5 206 70.9
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.8e-77 292.4 193 76.7
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 3.6e-77 292.0 202 73.8
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 3.6e-77 292.0 206 71.8
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.8e-76 289.7 206 73.3
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 9.8e-75 283.9 220 67.3
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.3e-74 283.5 217 68.2
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.2e-74 282.7 211 69.2
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-73 280.0 228 64.9
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 3.2e-73 278.9 221 63.3
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.7e-72 275.8 223 61.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.0e-71 273.9 221 62.9
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 8.6e-71 270.8 215 62.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.9e-70 269.6 223 61.4
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.9e-70 269.6 223 61.4
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.5e-70 269.2 225 60.9
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.2e-69 266.9 222 60.4
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.6e-69 265.4 221 60.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 3.6e-69 265.4 221 59.3
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.7e-69 265.0 215 62.3
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.0e-68 263.8 221 60.6
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.0e-68 263.8 221 60.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.4e-68 263.5 220 59.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.8e-68 263.1 215 61.9
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.2e-68 261.5 215 61.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 8.9e-68 260.8 213 59.6
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.5e-67 260.0 209 66.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.6e-67 259.2 211 60.2
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.4e-67 258.8 221 60.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.4e-67 258.8 224 58.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 9.8e-67 257.3 222 58.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-66 256.9 209 61.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.3e-66 256.9 221 58.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.2e-66 256.1 214 57.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.2e-66 256.1 221 59.7
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 4.9e-66 255.0 210 59.5
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 4.9e-66 255.0 228 56.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.9e-66 255.0 221 57.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.4e-65 253.4 216 58.8
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.4e-65 253.4 221 57.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.4e-65 253.4 216 59.3
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.4e-65 253.4 217 57.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.9e-65 253.1 215 60.0
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 9.2e-65 250.8 221 57.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 9.2e-65 250.8 224 55.4
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.0e-64 249.6 221 56.1
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.5e-64 248.8 205 62.0
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 4.6e-64 248.4 222 55.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.3e-63 246.9 221 59.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.3e-63 246.9 223 57.8
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.7e-63 246.5 221 56.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.3e-63 246.1 222 56.3
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.3e-63 246.1 222 56.3
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 2.3e-63 246.1 221 57.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 3.0e-63 245.7 209 59.3
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.0e-63 245.7 219 57.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.0e-63 245.0 222 55.9
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 5.0e-63 245.0 221 55.7
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 5.0e-63 245.0 221 56.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 8.6e-63 244.2 220 56.4
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.1e-62 243.8 222 55.9
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.1e-62 243.8 219 52.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.5e-62 243.4 211 58.3
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.9e-62 243.0 222 55.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.9e-62 243.0 204 59.3
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 9.5e-62 240.7 215 55.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.5e-62 240.7 209 59.3
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.2e-61 240.4 210 60.0
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.1e-61 239.6 221 55.2
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.6e-61 238.8 221 56.6
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 4.7e-61 238.4 224 54.0
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 4.7e-61 238.4 233 56.2
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.0e-61 237.7 204 59.3
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.1e-60 237.3 169 67.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.4e-60 236.9 216 54.2
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.4e-60 236.9 216 56.0
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.8e-60 236.5 220 55.0
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.3e-60 236.1 206 56.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.1e-60 235.7 173 63.6
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.2e-60 235.0 224 54.0
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 8.9e-60 234.2 219 55.7
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.0e-59 233.0 225 54.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.6e-59 232.6 210 57.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 4.4e-59 231.9 219 54.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 5.8e-59 231.5 203 58.1
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 5.8e-59 231.5 203 58.1
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 5.8e-59 231.5 210 57.1
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 9.8e-59 230.7 209 58.9
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.9e-58 229.2 215 52.6
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.7e-58 228.8 217 52.5
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 4.9e-58 228.4 215 54.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.9e-58 228.4 216 55.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.4e-58 228.0 210 56.2
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.1e-57 227.3 214 57.9
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.2e-57 225.7 219 54.8
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.2e-57 225.7 215 54.9
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 4.1e-57 225.3 207 56.0
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 4.1e-57 225.3 216 55.1
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 4.1e-57 225.3 215 53.5
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 4.1e-57 225.3 220 53.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.1e-57 225.3 206 58.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 5.4e-57 224.9 210 53.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.4e-57 224.9 213 53.1
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.1e-57 224.6 228 52.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 9.2e-57 224.2 190 60.0
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.2e-56 223.8 214 51.4
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.2e-56 223.8 190 60.0
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.6e-56 223.4 217 53.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.1e-56 223.0 201 54.7
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 4.6e-56 221.9 204 54.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.0e-56 221.5 144 68.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.0e-55 220.7 199 56.8
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.1e-54 217.2 221 50.2
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.5e-54 216.9 146 70.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.9e-54 216.5 221 49.8
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 4.3e-54 215.3 235 50.6
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.3e-54 214.5 206 55.3
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.3e-54 214.5 143 68.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 8.1e-53 211.1 204 53.4
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.8e-52 209.9 163 61.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.0e-52 208.8 205 51.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 6.8e-52 208.0 158 62.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 8.9e-52 207.6 205 61.5
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.9e-50 202.6 173 58.4
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-49 199.9 211 51.2
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.4e-49 199.5 219 57.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.1e-49 198.7 211 58.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.4e-49 198.4 219 50.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 7.1e-49 198.0 168 58.9
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.2e-48 197.2 204 52.5
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.2e-48 197.2 194 56.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 4.6e-48 195.3 212 48.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.0e-48 194.9 207 50.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.8e-48 194.5 239 45.6
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.0e-47 194.1 203 49.8
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.3e-47 193.7 142 63.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.7e-47 193.4 207 49.3
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.0e-47 192.6 202 49.5
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.6e-47 191.4 140 62.9
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.7e-45 185.3 213 47.9
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.8e-44 183.3 210 53.8
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.4e-44 183.0 160 56.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.1e-44 182.6 208 47.1
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.0e-44 182.2 209 45.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.0e-44 182.2 207 46.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.5e-43 180.3 174 52.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.7e-42 176.8 182 48.9
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.8e-42 175.6 184 51.6
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.2e-41 172.6 128 60.2
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.3e-39 167.2 123 61.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.0e-39 166.0 203 46.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.6e-39 164.9 131 57.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.9e-38 163.3 143 58.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.6e-38 161.8 213 44.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 5.6e-38 161.8 194 42.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 9.6e-38 161.0 127 58.3
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.6e-38 161.0 142 54.2
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.2e-35 154.1 217 41.5
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.5e-35 153.7 121 56.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.0e-35 153.3 145 51.0
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 5.8e-35 151.8 213 42.7
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.3e-34 150.6 264 38.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.1e-33 147.5 150 54.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.5e-32 142.5 81 76.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.3e-28 128.6 88 64.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 6.4e-26 121.7 59 93.2
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 4.8e-21 105.5 50 92.0
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.8e-20 103.6 60 83.3
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.5e-06 56.6 112 34.8


User provided reference genes

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