Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.5e-39 165.6 77 100.0
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 6.9e-29 130.2 79 75.9
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.2e-28 129.4 80 76.2
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.0e-27 126.3 79 75.9
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.0e-27 126.3 79 75.9
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.0e-27 126.3 79 75.9
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.3e-27 125.9 79 75.9
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 4.9e-27 124.0 80 71.2
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.5e-26 121.7 81 72.8
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.8e-21 105.5 70 68.6
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 2.1e-17 92.0 67 59.7
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.6e-17 91.3 74 58.1
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.6e-17 90.9 67 58.2
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 1.3e-16 89.4 65 60.0
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.8e-16 89.0 56 66.1
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 3.0e-16 88.2 76 51.3
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 5.1e-16 87.4 46 76.1
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.5e-15 85.9 76 53.9
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.5e-15 85.9 76 53.9
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 3.3e-15 84.7 72 52.8
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 3.3e-15 84.7 70 55.7
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 4.3e-15 84.3 73 54.8
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 2.8e-14 81.6 71 53.5
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 2.8e-14 81.6 70 52.9
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 3.7e-14 81.3 67 50.7
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 4.8e-14 80.9 76 51.3
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 4.8e-14 80.9 76 51.3
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 6.3e-14 80.5 64 54.7
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.4e-13 79.3 68 52.9
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 4.1e-13 77.8 48 66.7
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.4e-12 74.7 68 52.9
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.0e-11 73.2 64 53.1
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.7e-11 72.4 50 58.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.8e-11 71.2 72 47.2
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 5.0e-11 70.9 71 47.9
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 8.5e-11 70.1 62 51.6
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 8.5e-11 70.1 69 49.3
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.1e-10 69.7 71 46.5
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 2.5e-10 68.6 69 46.4
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.5e-10 67.4 69 43.5
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 5.5e-10 67.4 64 48.4
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 9.4e-10 66.6 61 50.8
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-09 65.9 71 47.9
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-09 65.9 71 47.9
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.6e-09 65.9 77 46.8
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 2.1e-09 65.5 76 46.1
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.7e-09 65.1 69 42.0
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.7e-09 65.1 61 49.2
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.7e-09 65.1 64 48.4
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.7e-09 65.1 61 49.2
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.7e-09 65.1 75 46.7
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 2.7e-09 65.1 83 43.4
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.6e-09 64.7 56 48.2
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 6.1e-09 63.9 70 44.3
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.0e-08 63.2 69 42.0
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.0e-08 63.2 63 52.4
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.0e-08 63.2 63 52.4
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.0e-08 63.2 59 54.2
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.4e-08 62.8 62 48.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.4e-08 62.8 66 47.0
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.4e-08 62.8 61 52.5
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.8e-08 62.4 60 55.0
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.8e-08 62.4 76 44.7
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.8e-08 62.4 76 44.7
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 2.3e-08 62.0 64 48.4
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 3.9e-08 61.2 66 43.9
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 6.7e-08 60.5 68 45.6
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 8.8e-08 60.1 41 61.0
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 8.8e-08 60.1 69 42.0
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.5e-07 59.3 64 50.0
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.0e-07 58.9 38 63.2
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 2.6e-07 58.5 59 52.5
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.6e-07 58.5 40 65.0
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 3.3e-07 58.2 78 42.3
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.3e-07 58.2 74 40.5
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.3e-07 58.2 77 41.6
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 4.4e-07 57.8 41 58.5
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 4.4e-07 57.8 74 43.2
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.7e-07 57.4 66 45.5
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 5.7e-07 57.4 62 45.2
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 5.7e-07 57.4 58 41.4
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 7.4e-07 57.0 58 46.6
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 9.7e-07 56.6 79 39.2
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 9.7e-07 56.6 74 44.6
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 9.7e-07 56.6 49 55.1
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.3e-06 56.2 77 44.2
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-06 56.2 69 40.6
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.2e-06 55.5 71 40.8
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.2e-06 55.5 77 39.0
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 2.8e-06 55.1 74 41.9
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 2.8e-06 55.1 65 46.2
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 3.7e-06 54.7 65 44.6
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 4.8e-06 54.3 45 51.1
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 4.8e-06 54.3 64 39.1
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 6.3e-06 53.9 61 45.9
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 8.2e-06 53.5 68 44.1
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 8.2e-06 53.5 70 44.3


User provided reference genes

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