Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.1e-50 201.1 100 100.0
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.7e-40 169.1 101 86.1
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.5e-39 165.2 94 84.0
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 7.3e-39 163.7 99 80.8
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 8.1e-38 160.2 103 81.6
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.1e-37 159.8 100 79.0
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 3.4e-36 154.8 100 78.0
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.9e-35 151.8 101 76.2
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.8e-35 151.4 92 82.6
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 8.4e-35 150.2 94 80.9
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.4e-34 149.4 94 79.8
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.9e-34 149.1 109 71.6
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.4e-34 148.7 100 74.0
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.6e-33 146.0 91 79.1
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-33 145.2 91 79.1
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-33 145.2 91 78.0
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.7e-33 145.2 91 78.0
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 6.0e-33 144.1 89 83.1
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.9e-32 141.4 91 80.2
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.9e-32 141.4 78 85.9
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 5.1e-32 141.0 93 74.2
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 6.6e-32 140.6 94 76.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.1e-31 139.8 97 75.3
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.9e-31 139.0 89 80.9
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.9e-31 139.0 96 71.9
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.9e-31 139.0 100 71.0
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 5.6e-31 137.5 87 80.5
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.3e-30 136.3 90 73.3
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.6e-30 136.0 98 71.4
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.6e-30 136.0 102 71.6
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.6e-30 136.0 88 77.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.8e-30 135.2 94 71.3
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 3.6e-30 134.8 97 70.1
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 4.8e-30 134.4 90 73.3
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 8.1e-30 133.7 82 82.9
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 8.1e-30 133.7 96 68.8
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.4e-29 132.9 94 69.1
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.8e-29 132.5 87 79.3
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.8e-29 132.5 87 79.3
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.4e-29 132.1 87 72.4
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.1e-29 131.7 95 69.5
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 4.0e-29 131.3 90 70.0
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 6.9e-29 130.6 83 80.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 6.9e-29 130.6 98 64.3
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.2e-28 129.8 93 71.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 3.4e-28 128.3 84 77.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.4e-28 128.3 98 63.3
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 3.4e-28 128.3 94 68.1
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 4.4e-28 127.9 93 68.8
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 5.8e-28 127.5 72 86.1
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 5.8e-28 127.5 94 69.1
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 9.9e-28 126.7 80 80.0
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.9e-28 126.7 93 68.8
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 9.9e-28 126.7 90 66.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 9.9e-28 126.7 92 67.4
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-27 126.3 94 68.1
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.3e-27 126.3 93 68.8
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.7e-27 125.9 98 64.3
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.2e-27 125.6 94 68.1
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-27 125.2 94 67.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.8e-27 124.8 90 65.6
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 3.8e-27 124.8 87 67.8
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 3.8e-27 124.8 98 62.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 4.9e-27 124.4 95 65.3
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 4.9e-27 124.4 76 71.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.9e-27 124.4 84 72.6
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.9e-27 124.4 74 77.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 6.4e-27 124.0 93 67.7
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 6.4e-27 124.0 86 72.1
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 6.4e-27 124.0 86 72.1
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.4e-27 124.0 83 72.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 8.4e-27 123.6 93 66.7
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.1e-26 123.2 94 67.0
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.1e-26 123.2 86 69.8
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.9e-26 122.5 73 76.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.9e-26 122.5 113 61.1
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.9e-26 122.5 89 67.4
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.4e-26 122.1 85 69.4
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.2e-26 121.7 80 71.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 4.2e-26 121.3 84 70.2
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.4e-26 120.9 73 75.3
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 7.1e-26 120.6 90 66.7
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 9.3e-26 120.2 82 75.6
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.6e-25 119.4 93 63.4
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.1e-25 119.0 93 63.4
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.1e-25 119.0 84 69.0
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.1e-25 119.0 72 70.8
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.1e-25 119.0 93 63.4
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.7e-25 118.6 93 59.1
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 3.5e-25 118.2 69 75.4
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 4.6e-25 117.9 91 67.0
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 7.8e-25 117.1 84 65.5
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 7.8e-25 117.1 84 65.5
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.0e-24 116.7 89 64.0
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.3e-24 116.3 69 73.9
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.7e-24 115.9 84 67.9
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.7e-24 115.9 79 67.1
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-24 115.9 74 66.2
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.7e-24 115.9 78 66.7
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.7e-24 115.9 79 65.8
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 2.3e-24 115.5 99 58.6
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 3.0e-24 115.2 79 73.4
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 3.9e-24 114.8 80 70.0
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 5.1e-24 114.4 82 74.4
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 6.6e-24 114.0 77 72.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 8.7e-24 113.6 94 55.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.1e-23 113.2 78 69.2
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.5e-23 112.8 70 65.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.3e-23 111.3 83 62.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.3e-23 111.3 82 63.4
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.6e-23 110.9 78 69.2
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 3.6e-22 108.2 94 59.6
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 3.6e-22 108.2 84 59.5
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.8e-22 107.8 71 70.4
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 8.1e-22 107.1 80 70.0
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 8.1e-22 107.1 80 70.0
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 8.1e-22 107.1 67 71.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 8.1e-22 107.1 72 62.5
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-21 106.3 71 69.0
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.8e-21 105.9 99 55.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.8e-21 105.9 67 70.1
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.8e-21 105.9 65 73.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.8e-21 105.9 65 73.8
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.8e-21 105.9 86 55.8
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.4e-21 105.5 82 65.9
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.4e-21 105.5 67 74.6
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 4.0e-21 104.8 89 58.4
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 4.0e-21 104.8 89 58.4
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 4.0e-21 104.8 89 57.3
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 5.3e-21 104.4 64 75.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.9e-21 104.0 86 58.1
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.2e-20 103.2 86 58.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.7e-19 99.4 79 58.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.9e-18 95.9 88 52.3
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 7.1e-18 94.0 72 62.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.6e-17 92.8 89 53.9
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 7.9e-17 90.5 113 47.8
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.0e-16 88.6 87 54.0
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.0e-16 88.6 92 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.9e-16 88.2 68 58.8
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.9e-16 88.2 65 64.6
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.1e-16 87.8 70 60.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.7e-16 87.4 61 62.3
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 8.7e-16 87.0 105 48.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 8.7e-16 87.0 63 65.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-15 86.3 65 63.1
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.9e-15 85.9 70 58.6
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 3.3e-15 85.1 72 55.6
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 7.4e-15 84.0 61 57.4
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.8e-14 82.0 71 56.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.0e-13 77.0 50 68.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.4e-12 75.1 63 49.2
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 8.4e-11 70.5 44 70.5
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 3.5e-09 65.1 72 44.4
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 3.9e-08 61.6 47 72.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.7e-07 57.8 42 69.0


User provided reference genes

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