Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 0.0e+00 3595.8 2028 100.0
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 3.1e-176 624.4 2088 32.6
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 1.3e-145 522.7 2270 30.8
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 2.2e-142 511.9 2377 29.9
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 2.4e-136 491.9 2248 29.9
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 2.3e-131 475.3 1755 30.9
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 1.1e-117 429.9 2194 30.5
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 7.2e-117 427.2 2098 29.9
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 5.0e-94 351.3 1190 33.7
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 1.9e-40 173.3 1027 27.5
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 3.7e-28 132.5 720 27.4
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 7.7e-18 98.2 106 50.9
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 6.5e-17 95.1 119 46.2
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 6.5e-17 95.1 105 49.5
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 8.5e-17 94.7 106 50.0
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 8.5e-17 94.7 106 50.0
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 2.5e-16 93.2 510 29.0
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 8.8e-14 84.7 250 35.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-13 84.3 247 36.4
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.1e-13 84.3 99 48.5
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 1.5e-13 84.0 89 52.8
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.0e-13 83.6 247 35.2
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.0e-13 83.6 247 35.2
Sp5g31890 Schrenkiella parvula HOM05D010491 ORTHO05D012559 2.0e-13 83.6 355 30.4
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 4.3e-13 82.4 247 34.8
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 5.7e-13 82.0 156 39.1
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 5.7e-13 82.0 108 45.4
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 1.7e-12 80.5 261 31.4
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 1.7e-12 80.5 108 44.4
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.2e-12 80.1 292 31.8
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 1.4e-11 77.4 104 47.1
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 2.4e-11 76.6 126 42.9
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 6.9e-11 75.1 160 33.1
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 1.5e-10 73.9 226 33.6
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 2.0e-10 73.6 91 47.3
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 2.6e-10 73.2 243 32.9
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 2.6e-10 73.2 93 49.5
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.4e-10 72.8 90 46.7
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 4.5e-10 72.4 143 37.8
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 7.7e-10 71.6 365 27.4
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 1.0e-09 71.2 83 47.0
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 1.7e-09 70.5 88 46.6
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 1.7e-09 70.5 81 44.4
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.2e-09 70.1 301 30.2
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 8.5e-09 68.2 251 30.7
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 8.5e-09 68.2 313 29.7
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.1e-08 67.8 80 51.2
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.9e-08 67.0 128 38.3
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.9e-08 67.0 128 38.3
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 2.5e-08 66.6 87 42.5
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 3.2e-08 66.2 111 41.4
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 4.2e-08 65.9 145 31.7
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 5.5e-08 65.5 40 72.5
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 5.5e-08 65.5 40 72.5
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 7.2e-08 65.1 204 29.9
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 7.2e-08 65.1 38 73.7
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 7.2e-08 65.1 110 37.3
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 9.4e-08 64.7 90 36.7
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 9.4e-08 64.7 89 46.1
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.6e-07 63.9 174 35.1
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.6e-07 63.9 39 71.8
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 4.7e-07 62.4 178 30.9
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 1.0e-06 61.2 40 67.5
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 1.4e-06 60.8 40 67.5


User provided reference genes

Program Settings