Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 3.7e-171 604.7 299 100.0
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 2.9e-147 525.4 300 86.7
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 3.7e-147 525.0 300 86.0
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.1e-146 523.5 300 85.3
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.9e-146 522.7 310 84.2
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 2.4e-146 522.3 310 84.5
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 5.4e-146 521.2 310 83.9
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.2e-145 520.0 310 82.9
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 3.5e-145 518.5 310 82.6
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 4.6e-145 518.1 311 83.9
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.2e-142 510.0 310 82.3
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.5e-140 503.1 310 81.0
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 1.1e-138 496.9 347 73.5
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 6.6e-136 487.6 310 77.4
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 3.5e-121 438.7 306 69.0
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.3e-120 436.8 306 69.0
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.3e-119 432.2 311 70.1
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 7.3e-119 431.0 310 68.1
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 9.6e-119 430.6 310 67.7
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 4.8e-118 428.3 305 68.5
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.4e-117 426.8 304 72.7
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.8e-117 426.4 305 69.2
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 9.0e-117 424.1 310 66.8
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 9.0e-117 424.1 307 67.4
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 4.5e-116 421.8 310 65.8
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 7.6e-116 421.0 310 66.8
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.3e-115 420.2 310 66.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 3.8e-115 418.7 310 65.8
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 6.4e-115 417.9 316 65.2
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 8.4e-115 417.5 304 67.4
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.1e-114 417.2 310 65.8
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.4e-114 416.8 310 65.2
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.4e-114 416.8 306 66.3
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 5.4e-114 414.8 313 65.8
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 7.1e-114 414.5 305 66.6
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.2e-113 413.7 324 63.0
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 7.9e-113 411.0 304 64.8
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.8e-112 409.8 305 66.2
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 1.8e-112 409.8 308 64.9
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 2.3e-112 409.5 304 65.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 3.9e-112 408.7 312 65.1
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 5.1e-112 408.3 308 64.9
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 5.1e-112 408.3 310 63.9
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 8.7e-112 407.5 305 65.6
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-111 407.1 305 64.3
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 1.5e-111 406.8 305 63.3
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 1.5e-111 406.8 305 64.3
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.5e-111 406.8 303 65.0
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.9e-111 406.4 310 63.9
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 4.3e-111 405.2 310 64.2
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 4.8e-110 401.7 306 63.7
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 4.8e-110 401.7 305 63.6
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.4e-109 399.4 302 64.6
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.4e-109 399.4 308 63.3
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 4.0e-109 398.7 336 58.9
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 4.0e-109 398.7 311 64.3
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.0e-109 397.5 310 61.0
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 1.2e-108 397.1 295 64.4
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.5e-108 396.7 280 68.2
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.4e-108 395.6 315 60.0
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.5e-108 395.2 310 60.3
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.3e-107 393.7 308 63.3
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.7e-107 393.3 311 64.0
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.9e-107 392.5 303 63.4
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 8.4e-107 391.0 308 61.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.4e-106 390.2 302 63.9
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.4e-106 390.2 305 62.0
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 4.2e-106 388.7 306 60.8
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 4.2e-106 388.7 300 63.7
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 4.2e-106 388.7 308 60.7
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 2.7e-105 386.0 307 59.3
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 4.6e-105 385.2 306 62.4
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 4.6e-105 385.2 341 56.6
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 7.9e-105 384.4 305 61.3
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 1.0e-104 384.0 276 65.2
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.3e-104 383.6 306 61.4
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.8e-104 383.3 302 60.9
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 6.7e-104 381.3 303 61.4
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.1e-103 380.6 310 60.3
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 2.5e-103 379.4 339 57.8
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 3.3e-103 379.0 281 66.2
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 9.6e-103 377.5 337 56.1
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 2.8e-102 375.9 316 58.2
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 4.0e-101 372.1 305 60.3
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.0e-99 367.5 311 59.8
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.4e-98 363.6 322 57.5
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.9e-98 363.2 292 59.2
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.2e-97 360.5 285 64.6
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 5.1e-96 355.1 282 64.2
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 5.7e-95 351.7 290 62.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 2.2e-94 349.7 283 61.1
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 3.1e-93 345.9 365 48.8
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 3.1e-93 345.9 306 56.5
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.2e-90 335.9 286 58.7
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 5.3e-85 318.5 306 53.6
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 3.4e-84 315.8 323 52.0
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 5.0e-83 312.0 305 52.1
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 1.9e-82 310.1 272 58.5
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.5e-82 309.7 310 54.2
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 7.9e-81 304.7 305 53.4
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 7.9e-81 304.7 302 52.3
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.1e-77 291.2 300 50.7
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.2e-76 290.8 237 60.8
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.7e-75 287.0 283 54.1
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 3.2e-74 282.7 220 62.7
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.4e-72 277.3 246 57.3
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 1.0e-64 251.1 185 63.8
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.8e-62 243.0 310 42.6
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 4.8e-62 242.3 186 61.3
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 2.7e-60 236.5 186 60.2
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 6.5e-59 231.9 215 55.3
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 9.4e-58 228.0 198 59.1
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.7e-57 226.5 167 67.1
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.0e-56 224.6 192 59.9
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 5.0e-51 205.7 343 35.9
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 3.3e-50 203.0 231 48.1
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 3.0e-48 196.4 294 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 1.4e-45 187.6 206 49.0
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.3e-43 181.0 127 69.3
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.5e-42 177.6 150 54.0
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.2e-41 174.5 161 54.7
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.6e-36 157.5 131 58.8
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.2e-33 147.9 284 34.9
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.4e-31 139.4 103 60.2
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 9.2e-29 131.7 281 31.7
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 9.2e-29 131.7 263 32.7
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 7.3e-26 122.1 100 57.0
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.7e-22 110.9 78 62.8
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.4e-21 107.8 83 59.0
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.4e-16 90.5 82 57.3
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 7.8e-12 75.5 60 56.7
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.0e-11 75.1 70 55.7
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.0e-11 75.1 77 50.6
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.9e-10 70.9 55 60.0
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.5e-10 70.5 95 36.8
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 2.6e-07 60.5 36 77.8
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 4.9e-06 56.2 49 49.0


User provided reference genes

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