Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 5.3e-122 441.0 225 100.0
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 3.0e-88 328.9 195 82.6
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 8.1e-86 320.9 195 80.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.8e-85 319.7 195 80.5
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.2e-84 317.0 195 79.0
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.2e-84 317.0 195 79.5
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 7.5e-84 314.3 202 76.7
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 7.8e-81 304.3 195 75.9
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.3e-80 303.5 195 74.4
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 6.6e-80 301.2 195 73.8
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 6.6e-80 301.2 195 73.8
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 3.3e-79 298.9 187 75.4
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 4.7e-78 295.0 187 74.3
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 3.1e-77 292.4 196 69.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.2e-68 263.8 208 62.5
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.4e-68 261.9 227 59.0
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 8.4e-67 257.7 204 61.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.2e-66 255.8 204 60.8
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.4e-66 255.0 207 60.4
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 7.1e-66 254.6 227 56.8
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 7.1e-66 254.6 225 57.8
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.6e-65 253.4 205 62.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.6e-65 253.4 229 57.2
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 4.6e-65 251.9 208 58.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.0e-64 250.8 223 57.4
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.3e-64 250.4 226 56.2
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.3e-64 249.6 208 57.7
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.3e-64 249.6 195 60.5
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.0e-64 249.2 203 60.1
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 5.1e-64 248.4 226 57.5
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 6.6e-64 248.1 223 55.6
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.5e-63 246.9 213 56.8
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.5e-63 246.9 195 60.5
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.9e-63 246.5 224 56.2
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 5.6e-63 245.0 231 58.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.3e-63 244.6 227 55.1
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.3e-63 244.6 227 55.1
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 7.3e-63 244.6 227 55.1
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.6e-63 244.2 227 55.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.6e-63 244.2 231 53.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 222 55.9
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.1e-62 243.0 210 57.1
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.8e-62 242.7 192 59.9
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.6e-62 242.3 193 60.1
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 3.6e-62 242.3 230 56.1
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 6.2e-62 241.5 226 54.9
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 8.1e-62 241.1 236 53.0
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 8.1e-62 241.1 223 52.9
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.1e-61 240.7 192 60.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.4e-61 240.4 232 54.7
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.8e-61 240.0 223 53.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.8e-61 240.0 202 57.9
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.4e-61 239.6 223 54.3
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 3.1e-61 239.2 223 53.8
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 4.0e-61 238.8 159 73.6
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 4.0e-61 238.8 228 53.1
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 4.0e-61 238.8 227 54.6
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 5.3e-61 238.4 229 53.7
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.0e-60 236.5 182 62.1
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 2.0e-60 236.5 226 54.9
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.0e-60 236.5 194 59.3
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 4.4e-60 235.3 222 54.1
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 4.4e-60 235.3 195 55.9
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 4.4e-60 235.3 187 59.4
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.3e-59 233.8 176 64.2
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.7e-59 233.4 207 55.6
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.2e-59 233.0 195 56.4
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.9e-59 232.6 203 56.7
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 3.8e-59 232.3 228 51.8
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.9e-59 231.9 204 53.4
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.4e-59 231.5 204 55.9
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 8.4e-59 231.1 194 57.2
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.1e-58 230.7 231 53.2
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.4e-58 230.3 226 54.4
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.4e-58 230.3 194 58.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.2e-58 229.2 224 54.9
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.2e-58 228.8 202 59.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 4.2e-58 228.8 230 51.3
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 4.2e-58 228.8 227 51.1
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 5.4e-58 228.4 221 52.0
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 5.4e-58 228.4 230 50.9
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 9.3e-58 227.6 224 54.5
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.2e-57 227.3 230 50.9
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.2e-57 227.3 227 51.1
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.0e-57 224.9 207 56.0
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.3e-56 223.8 228 53.5
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.7e-56 223.4 226 50.4
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.9e-56 222.2 230 48.3
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 5.1e-56 221.9 229 54.1
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 5.1e-56 221.9 228 49.1
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.5e-55 219.5 226 49.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 3.3e-55 219.2 184 58.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 3.3e-55 219.2 231 53.2
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.6e-54 215.7 194 52.6
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 4.8e-54 215.3 235 47.2
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.4e-53 213.8 194 52.1
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.4e-53 213.8 226 50.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.8e-53 213.4 226 49.6
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 9.0e-53 211.1 196 53.6
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.5e-52 210.3 232 49.6
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 2.6e-52 209.5 211 50.7
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 4.5e-52 208.8 228 49.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 9.9e-52 207.6 251 47.8
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.9e-51 205.3 258 43.0
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 6.4e-51 204.9 183 54.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.1e-50 204.1 184 53.3
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.4e-50 203.8 208 51.0
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 9.3e-50 201.1 175 55.4
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.7e-49 199.5 208 49.5
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.7e-49 199.5 208 49.5
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 3.5e-49 199.1 194 53.6
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.6e-49 198.7 208 49.5
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.0e-49 198.4 178 53.9
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.0e-49 198.4 152 59.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.5e-47 193.0 226 46.9
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.6e-47 191.8 171 55.0
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.7e-46 189.1 142 62.0
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 2.0e-44 183.3 156 53.8
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.3e-43 180.6 197 46.7
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.7e-43 180.3 220 45.9
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 4.2e-42 175.6 124 64.5
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.6e-41 172.2 230 43.0
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.0e-40 171.0 149 57.0
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.3e-38 164.1 230 40.9
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 2.1e-38 163.3 231 41.6
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.5e-36 157.1 155 52.3
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.3e-35 154.1 212 40.6
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 8.4e-35 151.4 252 38.9
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 7.2e-34 148.3 229 37.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.0e-32 144.4 225 36.9
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.9e-31 140.2 128 53.1
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.3e-27 127.5 196 37.8
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 5.5e-26 122.1 246 34.1
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.1e-23 114.4 205 35.1
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.3e-23 112.8 116 50.0
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.0e-19 101.3 72 66.7
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.0e-19 101.3 143 39.2
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.3e-19 100.9 76 61.8
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 7.9e-17 91.7 84 52.4
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 5.7e-15 85.5 84 50.0
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 3.6e-09 66.2 168 28.0
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 2.3e-08 63.5 163 29.4


User provided reference genes

Program Settings