Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 7.0e-75 283.9 144 100.0
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 2.6e-61 238.8 144 82.6
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 2.6e-61 238.8 144 82.6
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 3.4e-61 238.4 146 84.2
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 5.7e-61 237.7 144 84.0
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 5.7e-61 237.7 144 84.0
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 5.7e-61 237.7 144 84.0
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 1.3e-60 236.5 145 83.4
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 1.7e-60 236.1 148 82.4
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 3.7e-60 235.0 149 82.6
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 8.3e-60 233.8 147 82.3
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 2.4e-59 232.3 144 82.6
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 2.4e-59 232.3 144 82.6
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 2.4e-59 232.3 144 82.6
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 3.1e-59 231.9 148 81.8
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 7.0e-59 230.7 146 82.9
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.6e-58 229.6 144 81.9
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.6e-58 229.6 144 81.9
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 3.7e-52 208.4 148 75.0
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 5.0e-49 198.0 145 72.4
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 5.0e-49 198.0 145 72.4
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.5e-48 195.7 145 71.7
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 5.6e-48 194.5 144 69.4
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 5.6e-48 194.5 143 67.8
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 4.7e-47 191.4 145 71.0
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 1.1e-46 190.3 145 69.7
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.4e-46 189.9 144 68.1
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 6.8e-46 187.6 146 66.4
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 2.0e-45 186.0 145 69.0
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 2.9e-44 182.2 146 63.0
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 8.3e-44 180.6 102 81.4
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 3.2e-43 178.7 144 63.2
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 4.1e-43 178.3 121 73.6
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 7.0e-43 177.6 144 65.3
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 9.2e-43 177.2 144 65.3
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 9.2e-43 177.2 144 67.4
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 9.2e-43 177.2 144 67.4
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 9.2e-43 177.2 144 66.0
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 2.1e-42 176.0 145 69.0
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 6.0e-42 174.5 144 65.3
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 1.7e-41 172.9 144 62.5
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 2.3e-41 172.6 143 64.3
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 2.3e-41 172.6 149 65.1
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 3.0e-41 172.2 144 63.9
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 3.9e-41 171.8 144 65.3
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 3.9e-41 171.8 143 62.2
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 3.9e-41 171.8 144 63.9
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 6.6e-41 171.0 145 64.8
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 6.6e-41 171.0 144 63.2
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 6.6e-41 171.0 142 63.4
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 6.6e-41 171.0 143 60.8
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 8.6e-41 170.6 145 64.8
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 1.5e-40 169.9 147 57.8
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 1.9e-40 169.5 144 61.8
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 2.5e-40 169.1 148 66.9
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 2.5e-40 169.1 145 62.8
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 2.5e-40 169.1 141 61.7
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 3.3e-40 168.7 143 60.1
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 5.6e-40 167.9 143 61.5
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 5.6e-40 167.9 146 61.6
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 7.3e-40 167.5 144 61.1
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 2.1e-39 166.0 150 60.0
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 2.8e-39 165.6 150 59.3
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 3.6e-39 165.2 100 75.0
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 3.6e-39 165.2 139 59.7
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 4.7e-39 164.9 146 57.5
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 4.7e-39 164.9 146 57.5
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 4.7e-39 164.9 100 74.0
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 4.7e-39 164.9 144 59.7
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 4.7e-39 164.9 144 62.5
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 6.2e-39 164.5 139 59.0
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 8.1e-39 164.1 143 59.4
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 8.1e-39 164.1 143 59.4
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 1.1e-38 163.7 147 60.5
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 1.1e-38 163.7 144 61.8
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.1e-38 163.7 144 59.7
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 3.1e-38 162.2 145 56.6
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 3.1e-38 162.2 107 72.0
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 3.1e-38 162.2 145 59.3
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 4.0e-38 161.8 146 58.2
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 4.0e-38 161.8 145 60.7
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 5.2e-38 161.4 143 59.4
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 5.2e-38 161.4 143 59.4
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 5.2e-38 161.4 144 59.0
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 6.8e-38 161.0 144 59.7
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 8.9e-38 160.6 144 59.0
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 8.9e-38 160.6 148 56.8
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 2.6e-37 159.1 139 56.8
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 4.4e-37 158.3 139 56.1
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 5.8e-37 157.9 99 73.7
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 9.9e-37 157.1 141 60.3
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 9.9e-37 157.1 143 58.0
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 1.7e-36 156.4 139 56.1
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 2.2e-36 156.0 143 55.9
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 3.7e-36 155.2 99 73.7
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 4.9e-36 154.8 99 73.7
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 1.1e-35 153.7 95 72.6
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 1.9e-35 152.9 143 58.0
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 4.1e-35 151.8 132 59.1
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 4.1e-35 151.8 144 53.5
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 4.1e-35 151.8 133 56.4
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 9.2e-35 150.6 104 70.2
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 1.6e-34 149.8 99 69.7
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.5e-32 143.3 106 67.0
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 2.8e-31 139.0 96 65.6
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 1.1e-30 137.1 134 52.2
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 4.0e-30 135.2 106 63.2
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 6.8e-30 134.4 149 50.3
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 1.2e-29 133.7 100 59.0
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 1.2e-29 133.7 100 59.0
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.0e-29 132.9 118 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 3.4e-29 132.1 104 59.6
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 6.0e-26 121.3 75 81.3
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 1.1e-24 117.1 102 51.0
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 1.1e-24 117.1 138 47.1
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 3.3e-24 115.5 102 50.0
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 2.4e-22 109.4 55 87.3
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 9.0e-22 107.5 75 66.7
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 5.8e-21 104.8 92 54.3
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 7.6e-21 104.4 118 47.5
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.4e-20 101.3 82 64.6
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 1.9e-19 99.8 102 50.0
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 4.6e-18 95.1 83 63.9
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 1.9e-16 89.7 76 48.7
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.9e-16 89.7 58 75.9
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 2.2e-12 76.3 56 75.0
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 4.8e-07 58.5 55 52.7


User provided reference genes

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