Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 2.6e-235 818.5 484 100.0
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 6.2e-83 312.4 538 53.0
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 5.4e-79 299.3 502 52.8
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 2.3e-77 293.9 530 52.8
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 6.6e-77 292.4 524 51.9
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 7.3e-76 288.9 593 47.0
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 3.6e-75 286.6 565 48.1
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 6.2e-75 285.8 582 47.9
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 7.5e-73 278.9 565 47.1
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 4.6e-70 269.6 617 44.6
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 7.8e-70 268.9 617 44.4
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 1.0e-69 268.5 587 44.1
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 1.1e-66 258.5 541 46.8
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 4.2e-55 219.9 259 52.9
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 6.0e-46 189.5 220 49.1
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 6.7e-45 186.0 261 46.0
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 1.5e-44 184.9 220 50.0
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.6e-43 181.4 215 47.9
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 4.0e-42 176.8 252 42.9
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 5.3e-42 176.4 259 43.2
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 4.5e-41 173.3 251 44.6
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 7.6e-41 172.6 255 45.5
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 3.0e-37 160.6 187 52.4
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 5.1e-37 159.8 254 43.7
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.1e-37 159.8 223 43.9
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 8.7e-37 159.1 211 46.9
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 3.3e-36 157.1 449 34.3
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 5.6e-36 156.4 242 45.9
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 7.4e-36 156.0 208 46.2
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 2.1e-35 154.5 208 41.8
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 4.8e-35 153.3 204 43.6
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 4.8e-35 153.3 419 34.4
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 8.2e-35 152.5 230 39.6
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 1.1e-34 152.1 255 41.2
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.1e-34 152.1 211 44.5
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 4.0e-34 150.2 227 44.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 1.5e-33 148.3 371 32.9
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.0e-33 147.9 259 40.2
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.6e-33 147.5 464 30.8
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 3.4e-33 147.1 458 32.8
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.8e-33 146.4 252 37.7
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.0e-32 145.6 401 32.7
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.9e-32 144.1 515 29.9
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.9e-31 141.4 177 46.3
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.9e-31 141.4 215 41.4
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 7.1e-31 139.4 558 30.6
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 7.1e-31 139.4 558 30.6
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 9.3e-31 139.0 495 31.3
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 9.3e-31 139.0 242 38.8
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 3.0e-29 134.0 242 40.1
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 3.9e-29 133.7 209 41.1
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 3.9e-29 133.7 202 39.1
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.1e-28 132.1 264 37.9
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.3e-27 128.6 513 28.5
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 2.8e-27 127.5 459 30.7
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 2.8e-27 127.5 451 32.2
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 4.8e-27 126.7 239 38.9
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.3e-27 126.3 402 32.1
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 1.2e-25 122.1 426 31.7
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.2e-25 122.1 208 40.9
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 3.4e-25 120.6 360 31.9
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.7e-24 118.2 491 29.7
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.5e-24 115.9 475 28.0
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 1.1e-23 115.5 423 29.6
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.1e-23 115.5 180 38.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.4e-23 115.2 234 36.3
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.5e-23 114.4 269 34.2
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.2e-23 113.6 181 41.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 4.2e-23 113.6 223 37.7
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 4.2e-23 113.6 488 30.9
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.5e-23 113.2 211 39.8
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 7.2e-23 112.8 209 36.8
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 7.2e-23 112.8 218 36.7
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.2e-23 112.8 211 39.8
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 2.1e-22 111.3 450 28.4
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 4.6e-22 110.2 203 36.9
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 7.9e-22 109.4 249 34.9
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.4e-21 108.6 237 35.9
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.3e-21 107.8 244 36.1
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 3.9e-21 107.1 240 36.2
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 2.0e-20 104.8 180 40.0
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 2.5e-20 104.4 230 35.2
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 2.5e-20 104.4 489 26.4
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 2.5e-20 104.4 500 28.2
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.5e-20 104.4 219 36.1
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 3.3e-20 104.0 209 38.3
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 4.3e-20 103.6 184 39.1
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 5.7e-20 103.2 439 35.5
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.4e-20 102.8 235 36.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 7.4e-20 102.8 203 37.9
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 9.7e-20 102.4 202 36.6
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.3e-19 102.1 143 42.7
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.3e-19 102.1 221 36.2
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.3e-19 102.1 264 33.3
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.3e-19 102.1 480 28.5
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.8e-19 100.9 244 34.8
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.4e-18 98.6 446 26.5
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.8e-18 98.2 205 37.1
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 3.4e-17 94.0 449 27.6
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.2e-16 91.3 230 31.7
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.9e-16 90.9 526 26.4
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 1.9e-15 88.2 213 31.5
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 2.5e-15 87.8 224 33.0
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.1e-14 84.7 214 31.3
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 3.6e-14 84.0 182 32.4
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 4.7e-14 83.6 258 32.2
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 6.1e-14 83.2 232 33.6
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.4e-13 82.0 237 34.2
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 5.1e-13 80.1 405 28.4
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.4e-12 76.3 465 25.6
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 1.3e-11 75.5 142 41.5
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 2.2e-11 74.7 184 35.9
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 8.2e-11 72.8 132 40.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 8.2e-11 72.8 110 41.8
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.4e-10 72.0 128 38.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 2.4e-10 71.2 132 37.1
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 7.0e-10 69.7 135 39.3
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.5e-09 68.6 170 30.6
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 5.9e-09 66.6 123 34.1
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 5.9e-09 66.6 154 37.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.0e-08 65.9 143 35.7
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-08 65.5 155 32.9
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.3e-08 65.5 400 26.2
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.2e-08 64.7 167 31.1
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.8e-08 63.9 109 35.8
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.8e-08 63.9 109 35.8
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 5.0e-08 63.5 190 32.1
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 8.5e-08 62.8 171 32.2
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.1e-07 62.4 190 31.1
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.1e-07 62.4 192 29.2
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-07 62.4 130 40.0
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.1e-07 62.4 143 35.0
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.5e-07 62.0 113 35.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.9e-07 61.6 138 32.6
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.9e-07 61.6 138 32.6
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.2e-07 60.8 108 36.1
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.2e-07 60.8 157 28.0
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.2e-07 60.5 132 31.8
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.2e-07 60.5 120 37.5
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 5.5e-07 60.1 192 29.2
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 5.5e-07 60.1 163 31.9
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 7.2e-07 59.7 130 35.4
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 7.2e-07 59.7 181 31.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 7.2e-07 59.7 189 30.7
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 9.4e-07 59.3 154 30.5
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.2e-06 58.9 173 29.5
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.2e-06 58.9 148 28.4
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.2e-06 58.9 181 28.2
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.6e-06 58.5 112 33.9
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 1.6e-06 58.5 443 25.7
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 2.1e-06 58.2 108 31.5
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 2.1e-06 58.2 123 33.3
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.1e-06 58.2 153 31.4
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 2.7e-06 57.8 160 33.8
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.7e-06 57.8 140 33.6
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.6e-06 57.4 141 34.0
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 4.7e-06 57.0 170 31.2
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 6.1e-06 56.6 106 31.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 8.0e-06 56.2 179 32.4
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 8.0e-06 56.2 103 34.0
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 8.0e-06 56.2 127 32.3
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 8.0e-06 56.2 125 32.0
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 8.0e-06 56.2 158 28.5
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 8.0e-06 56.2 136 32.4
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 8.0e-06 56.2 129 33.3


User provided reference genes

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